PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G04410.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 270aa    MW: 29714.8 Da    PI: 9.6763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G04410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-1171115554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+e+ErrRR+riN  +++Lr++lP a     k ++Ka+ L  +v+ +k+L
  OMERI05G04410.1  71 HSEAERRRRERINAHLATLRRILPDA-----KQMDKATLLASVVNQVKHL 115
                      9*************************.....67*************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.40566115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1270124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-971115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1171118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1072121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.3E-6154208No hitNo description
Gene3DG3DSA:3.30.70.2603.8E-6155209No hitNo description
PROSITE profilePS5167110.363157235IPR002912ACT domain
CDDcd048731.45E-6159194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAACQQQIWQ EGKQQQHLQH GGYDDLSSVY RGAVVLPRRQ DGLAPEPPPP PQPSSSLGRS  60
AAAQATAMRI HSEAERRRRE RINAHLATLR RILPDAKQMD KATLLASVVN QVKHLKTRAT  120
EATTPSTAAT VPPEANEVTV QCYAGGEHTA AARTYVRATV SCDDRPGLLA DIAAAFRRLR  180
LRPLSADMSC LGGRTRHAFV LCREEEEDAA AEARPLKEAV RQALAKVALP ETVYGGGRSK  240
RQRLMMESRY STAVMHTHMD PPYCWCSSRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1106190.0AK110619.1 Oryza sativa Japonica Group cDNA clone:002-168-H12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638377.11e-151putative transcription factor bHLH107
RefseqXP_015638378.11e-151putative transcription factor bHLH107
RefseqXP_015638379.11e-151putative transcription factor bHLH107
TrEMBLA0A0E0DMJ50.0A0A0E0DMJ5_9ORYZ; Uncharacterized protein
STRINGOMERI05G04280.21e-178(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-11bHLH family protein