PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI05G03980.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 119aa MW: 12944.9 Da PI: 11.5148

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI05G03980.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.9	2.3e-05	46	101	4	55
HHHHHHHHHHHH...HHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdr...iNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++e+ rrR++r ++ ++e Lr+l+P ++ ++ s e L +A +YI Lq OMERI05G03980.1 46 SNKEMRRRRMRRcveVRRKMEALRRLVPGgGGGGAAGEDSGEELLFRAADYIARLQ 101 56777777777655599**********776889999**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-6	53	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-4	54	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MVAHATINNG RCDAAAAVAA RSRPAVMPPA TARSNHRAAA CKNSGSNKEM RRRRMRRCVE 60 VRRKMEALRR LVPGGGGGGA AGEDSGEELL FRAADYIARL QVQVKVMQLM VDVLEQTRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP014961	1e-113	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	1e-113	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637969.1	3e-48	transcription factor IBH1
TrEMBL	A0A0E0DMB9	2e-79	A0A0E0DMB9_9ORYZ; Uncharacterized protein
STRING	ORUFI05G04170.1	1e-47	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9111	21	26