PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI05G02570.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 505aa MW: 53194.8 Da PI: 6.8765 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.1 | 2.4e-16 | 334 | 380 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq OMERI05G02570.3 334 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 380 5*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.17E-18 | 326 | 384 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.2E-21 | 327 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-21 | 327 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.006 | 330 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-14 | 334 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-17 | 336 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MLRGNDTGND LAELLWDNGA PAPLRPRPPP PFQPFTCSAA ATSSPAHDYL FIKNLMRGGG 60 AANHHHHHHH HDDVPWLHYH PVVDDDDDAD ADTAPLPPDY CAALLSGLSD HLPPPAAAAS 120 REDPDPCSSS HGAVVPSTSA VAKQARTSAA GDGGVMNFTF FSRPLQQRPS GGETASASAS 180 AAGTSSVPVE STVVQAATNR LRSTPLFSDQ RMAWLHPPKP SPRAAAPPPP PPLAPTTRHR 240 LDTAAATATV AQRLPPSEAR APDAPPPAAT ATATTSSVCS GNGDRSQLKR RDSHNNQSAE 300 WSASQDELDL DDELAGAHRR SAARSSKRSR TAEVHNLSER RRRDRINEKM RALQELIPNC 360 NKIDKASMLE EAIEYLKTLQ LQVQMMSMGT GMFVPPMMLP AAAAIQHHHM QMAGPMAAAA 420 HFPHLGAAAA MGLAGFGMPG AAFDMPRLAA AAQFPCPMFP AAPPMSMFAP PPPPPFPHAV 480 TTAVEQTPSP PGAADAGDAP AVKQA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 338 | 343 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287958 | 0.0 | AK287958.1 Oryza sativa Japonica Group cDNA, clone: J075053F01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638282.1 | 0.0 | transcription factor APG isoform X2 | ||||
Swissprot | Q6AT90 | 0.0 | APG_ORYSJ; Transcription factor APG | ||||
TrEMBL | A0A0E0DLQ0 | 0.0 | A0A0E0DLQ0_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI05G02560.2 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 4e-32 | phytochrome interacting factor 3 |
Publications ? help Back to Top | |||
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