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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI05G01620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 502aa MW: 54272.7 Da PI: 7.6555 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.4e-17 | 170 | 219 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OMERI05G01620.1 170 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 219 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.8E-9 | 170 | 219 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-16 | 170 | 228 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.37E-11 | 171 | 229 | No hit | No description |
SMART | SM00380 | 2.4E-32 | 171 | 233 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-17 | 171 | 228 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.596 | 171 | 227 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-6 | 262 | 306 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.55E-12 | 262 | 307 | No hit | No description |
SMART | SM00380 | 4.2E-13 | 263 | 311 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MELDLNNVAE GVVEKQETAA RSDSGTSESS VLNGEASGAA AAPAEEGSSS TPPPPPAAVL 60 EFSILRSSAS ASGENDADDD EEEATPSPPP QHNHHQQLVT RELFPSAAPS PRPAPQHWAE 120 LGFLRPDPPR PHPDIRLLAH APPPAPPPPP PQPQPQAAKK SRRGPRSRSS QYRGVTFYRR 180 TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNLSD YEEDMRQMKS 240 LSKEEFVHVL RRQSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKKAYDK AAIKCNGREA 300 VTNFEPSTYD GELPTDAAAQ GADVDLNLSI SQPAASQQSP KRDSGSLGLQ IHHGSFEGSE 360 FKRAKASCNS NDVAPSELAS RPHRFPLLTE HPPIWTAQPH PLFPNNEDAS RSSDQKRKPS 420 EGVAVPSWAW KQVSHHHPAP PHTLPLPFFS SSSSPPSSSS AAASSGFSKA ATTAAAAQHT 480 ATLRFDPTAP SSSSSSRHHH HH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT828346 | 0.0 | CT828346.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA215G24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639330.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 isoform X2 | ||||
Swissprot | B8AXC3 | 0.0 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A0E0DLA7 | 0.0 | A0A0E0DLA7_9ORYZ; Uncharacterized protein | ||||
STRING | ORUFI05G01620.2 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10083 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.2 | 2e-83 | related to AP2.7 |