PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI05G00970.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 430aa MW: 43903.7 Da PI: 8.7923

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI05G00970.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	5.9e-39	97	156	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e lkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++ OMERI05G00970.1 97 EPGLKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 156 56789****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-35	83	154	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-32	100	154	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.739	100	154	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	102	138	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MIFSPAFLDS SSWNDNNNNN HNQQQQQQHA HGHHQHHQVA AGCGSGGGGD GNNSHELLQQ 60 QSMIPGTLAD GGGGAVGPAK PMSMSERARL ARIPLPEPGL KCPRCDSTNT KFCYFNNYSL 120 SQPRHFCKTC RRYWTRGGAL RNVPVGGGCR RNKRTKSSKS SSSTSAAGSA SATGGTSSST 180 SSTATGGSSS AAAAMMPPQA QLPFLASLHH PLGGGDHYST GASRLGFPGL SSLDPRAKPK 240 PASAAAAAGS ASAATTTAGS TPAGSTTTTT SSTCATPNAP ALPAMLGGNL SILPPLLRLA 300 DFDAMSLGST FSGMAAAGKP PPVDAAGCYS VGAATGLEQW RLQQMQSFPF FHAMDHQAAM 360 AAPPPAMAMP GMFQLGLDGD GHGGGGDDGG ELHHAMPSKR EGYPRGMYGD HHLAGGYTSY 420 SSATTGNHLL

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MIFSPAFLDS SSWNDNNNNN HNQQQQQQHA HGHHQHHQVA AGCGSGGGGD GNNSHELLQQ  60
QSMIPGTLAD GGGGAVGPAK PMSMSERARL ARIPLPEPGL KCPRCDSTNT KFCYFNNYSL  120
SQPRHFCKTC RRYWTRGGAL RNVPVGGGCR RNKRTKSSKS SSSTSAAGSA SATGGTSSST  180
SSTATGGSSS AAAAMMPPQA QLPFLASLHH PLGGGDHYST GASRLGFPGL SSLDPRAKPK  240
PASAAAAAGS ASAATTTAGS TPAGSTTTTT SSTCATPNAP ALPAMLGGNL SILPPLLRLA  300
DFDAMSLGST FSGMAAAGKP PPVDAAGCYS VGAATGLEQW RLQQMQSFPF FHAMDHQAAM  360
AAPPPAMAMP GMFQLGLDGD GHGGGGDDGG ELHHAMPSKR EGYPRGMYGD HHLAGGYTSY  420
SSATTGNHLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638255.1	1e-71	dof zinc finger protein DOF3.6 isoform X1
Refseq	XP_025881094.1	3e-72	dof zinc finger protein DOF3.6 isoform X2
TrEMBL	A0A0E0DL25	0.0	A0A0E0DL25_9ORYZ; Uncharacterized protein
STRING	OMERI05G00920.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	6e-42	Dof family protein