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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OMERI04G24630.4 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | ARF | ||||||||
| Protein Properties | Length: 1765aa MW: 195885 Da PI: 6.2114 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 70 | 3.1e-22 | 183 | 284 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d + +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++
OMERI04G24630.4 183 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 272
99***********************9*****86555544..8************************************************..88 PP
SEE..EEEEE-S CS
B3 88 sefelvvkvfrk 99
++ +l+++++r+
OMERI04G24630.4 273 EKNQLLLGIRRA 284
99999****997 PP
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| 2 | B3 | 70 | 3.1e-22 | 1083 | 1184 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d + +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F
OMERI04G24630.4 1083 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 1170
99***********************9*****86555544..8************************************************.. PP
SSSEE..EEEEE-S CS
B3 86 grsefelvvkvfrk 99
++++ +l+++++r+
OMERI04G24630.4 1171 WNEKNQLLLGIRRA 1184
8899999****997 PP
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| 3 | Auxin_resp | 111.3 | 9.7e-37 | 309 | 392 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaa+t+s F+++YnPras+seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k
OMERI04G24630.4 309 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 392
79*******************************986599******************************************985 PP
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| 4 | Auxin_resp | 111.3 | 9.7e-37 | 1209 | 1292 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaa+t+s F+++YnPras+seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k
OMERI04G24630.4 1209 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 1292
79*******************************986599******************************************985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 2.22E-47 | 168 | 312 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 7.5E-41 | 175 | 298 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 2.12E-20 | 182 | 283 | No hit | No description |
| SMART | SM01019 | 1.4E-23 | 183 | 285 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 12.224 | 183 | 285 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 2.1E-20 | 183 | 284 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 4.1E-32 | 309 | 392 | IPR010525 | Auxin response factor |
| SuperFamily | SSF54277 | 5.89E-6 | 762 | 837 | No hit | No description |
| PROSITE profile | PS51745 | 21.572 | 766 | 854 | IPR000270 | PB1 domain |
| SuperFamily | SSF101936 | 2.22E-47 | 1068 | 1212 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 7.5E-41 | 1075 | 1198 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 2.12E-20 | 1082 | 1183 | No hit | No description |
| SMART | SM01019 | 1.4E-23 | 1083 | 1185 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 2.1E-20 | 1083 | 1184 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 12.224 | 1083 | 1185 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 4.1E-32 | 1209 | 1292 | IPR010525 | Auxin response factor |
| Pfam | PF02309 | 4.2E-7 | 1659 | 1750 | IPR033389 | AUX/IAA domain |
| SuperFamily | SSF54277 | 3.78E-7 | 1662 | 1741 | No hit | No description |
| PROSITE profile | PS51745 | 24.037 | 1666 | 1750 | IPR000270 | PB1 domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
| GO:0009908 | Biological Process | flower development | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1765 aa Download sequence Send to blast |
MVAISELGLR VCASLVWSEE EEMSSSSAAS IGPPQPPPPP APPEEEKKCL NSELWHACAG 60 PLVCLPTVGT RVVYFPQGHS EQVAASTNKE VEGHIPNYPN LPAQLICQLH DVTMHADVET 120 DEVYAQMTLQ PLNPVRRLGF LHDVCSAELL MVWRSEIFYA QEQNDAYLPA EMGIMSKQPT 180 NYFCKTLTAS DTSTHGGFSV PRRAAERVFP PLDFTQQPPA QELIARDIHD IEWKFRHIFR 240 GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRRASRPQTV MPSSVLSSDS 300 MHIGLLAAAA HAAATNSRFT IFYNPRASPS EFVIPLSKYI KAVFHTRISV GMRFRMLFET 360 EESSVRRYMG TITEVSDADP VRWPSSYWRS VKVGWDESTA GERPPRVSLW EIEPLTTFPM 420 YPSLFPLRVK HPWYSGVASL HDDSNALMWL RGVAGEGGFQ SLNFQSPGIG SWGQQRLHPS 480 LLSSDHDQYQ AVVAAAAASQ SGGYLKQQFL HLQQPMQSPQ EHCNLNPLLQ QQILQQASQQ 540 QIINPDAQNI QTMLSPSAIQ QQLQQLQQMQ QVQNDQKQKI QPDQSYQVPT SAVLPSPTSL 600 PSHLREKFGF SDPNANSSSF ITSSSSDNML DSSFLQGSSK AVDLSRFNQP VASEQQQQQQ 660 AWKQKFMGSQ SVSFGGSVLH NSPTSKDGSV ENKIGRDVQN QSLFSPQVDS SSLLYNMVPN 720 LTSNVSDGNL STIPSGSTYL QNAMYGCLDD SSGLLQNTGE NDPATRTFVK VYKSGSVGRS 780 LDITRFSNYA ELREELGQMF GIKGQLDDPD RSGWQLVFVD RENDVLLLGD DPWELRVCAS 840 LVWSEEEEMS SSSAASIGPP QPPPPPAPPE EGGWLGLFPP LRFAVHFVSL LVWLMTRSAS 900 AAAAAAAEKK CLNSELWHAC AGPLVCLPTV GTRVVYFPQG HSEQVRLSSP PQPSRGRACF 960 ASLSLSLLVS LVSDAGELAY VKVAASTNKE VEGHIPNYPN LPAQLICQLH DVTMHADVET 1020 DEVYAQMTLQ PLNPVRRLGF LHDVCSAELL MVWRSEIFYA QEQNDAYLPA EMGIMSKQPT 1080 NYFCKTLTAS DTSTHGGFSV PRRAAERVFP PLDFTQQPPA QELIARDIHD IEWKFRHIFR 1140 GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRRASRPQTV MPSSVLSSDS 1200 MHIGLLAAAA HAAATNSRFT IFYNPRASPS EFVIPLSKYI KAVFHTRISV GMRFRMLFET 1260 EESSVRRYMG TITEVSDADP VRWPSSYWRS VKVGWDESTA GERPPRVSLW EIEPLTTFPM 1320 YPSLFPLRVK HPWYSGVASL HDDSNALMWL RGVAGEGGFQ SLNFQSPGIG SWGQQRLHPS 1380 LLSSDHDQYQ AVVAAAAASQ SGGYLKQQFL HLQQPMQSPQ EHCNLNPLLQ QQILQQASQQ 1440 QIINPDAQNI QTMLSPSAIQ QQLQQLQQMQ QVQNDQKQKI QPDQSYQVPT SAVLPSPTSL 1500 PSHLREKFGF SDPNANSSSF ITSSSSDNML DSSFLQGSSK AVDLSRFNQP VASEQQQQQQ 1560 AWKQKFMGSQ SVSFGGSVLH NSPTSKDGSV ENKIGRDVQN QSLFSPQVDS SSLLYNMVPN 1620 LTSNVSDGNL STIPSGSTYL QNAMYGCLDD SSGLLQNTGE NDPATRTFVK VYKSGSVGRS 1680 LDITRFSNYA ELREELGQMF GIKGQLDDPD RSGWQLVFVD RENDVLLLGD DPWESFVNSV 1740 WYIKILSPED VHKMGKQGND PRYLS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 1e-149 | 46 | 1313 | 44 | 388 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AB071298 | 0.0 | AB071298.1 Oryza sativa OsARF8 mRNA for auxin response factor 8, partial cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015636872.1 | 0.0 | auxin response factor 12 isoform X1 | ||||
| Swissprot | Q258Y5 | 0.0 | ARFL_ORYSI; Auxin response factor 12 | ||||
| TrEMBL | A0A0E0DJY6 | 0.0 | A0A0E0DJY6_9ORYZ; Auxin response factor | ||||
| STRING | OMERI04G24270.5 | 0.0 | (Oryza meridionalis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP5850 | 30 | 39 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G30330.2 | 0.0 | auxin response factor 6 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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