PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G24620.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 709aa    MW: 80298.2 Da    PI: 5.1916
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G24620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.9e-06114136427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      ++C +f + G C  GdrC F Hgp
  OMERI04G24620.1 114 VPCYYFKK-GNCLKGDRCAFYHGP 136
                      689*9999.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.9532958IPR000571Zinc finger, CCCH-type
SMARTSM003560.00643057IPR000571Zinc finger, CCCH-type
PfamPF156631.9E-113186No hitNo description
PROSITE profilePS5010310.9916086IPR000571Zinc finger, CCCH-type
SMARTSM003560.456285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502110137IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5111136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.77E-5111135IPR000571Zinc finger, CCCH-type
PfamPF146081.5115135No hitNo description
Gene3DG3DSA:4.10.1000.107.3E-5115137IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MEADGAAAAA AEASTEAGTR PLAPEEEALR RNTDCVYFLA SPLTCKKGNE CDFRHSDNAR  60
MNPRDCWYWL NSNCLNPKCP FRHPPIDGMF GAPTTRMPAV SSHYAPFNSG KQLVPCYYFK  120
KGNCLKGDRC AFYHGPQSVG NNPSEQVAKV SSLPLEQLQT QKNDLLGIKD SVQSTNSIQH  180
GAPITNERGK TAVDRSTVNS ARTATVAIPV ATNAMSCPKS EKVKNSTPAA LKESFTTSSG  240
EDHPECYQNH FPMDSDPVRD WNQSYEMPPA DDLPQNSREA DELLGESSPG FDVLVDNDAD  300
GAAYLHDEDF GGDMYPVEDY EYAPADFDVR AHHERERFNG MDEQDQMGHM YDGYERKRRR  360
SSERSMERPF HSERRFLQRD RDRVEMDGSD LRHRLRRRRI NESSLAISPE RNGEQRRRDE  420
RYRERAYGHR SHRDHHQSSR GSTLSSRLQG RIKLPGRSPD RVDTRSEKER DRRRLRDRLS  480
PVRRTEFQGT RHREAGQHEE QTQRRSSELA LGSRNADGQH LTKDVPDSHN FPHRKNLRDS  540
SKANGSVEPE ASLDFEGPKP LSVILQRKRE AAWANGTSAC SPKQDKSAEV SHRQASLAEA  600
EKEGDNIISS DEYKSGSGDE EFRDEGHIPV EGHGQSSSHG DKLEAEDIIE VDPVENQDAD  660
NYDQREGESY YEPIEGQDYK SDDENAYEDD DEEYDDDDDF ARKVGVVFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355359RKRRR
2355360RKRRRS
3471478RRRLRDRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708570.0AK070857.1 Oryza sativa Japonica Group cDNA clone:J023066C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636581.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0E0DJY10.0A0A0E0DJY1_9ORYZ; Uncharacterized protein
STRINGOMERI04G24260.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]