PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI04G20100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 340aa MW: 35713.5 Da PI: 10.5883 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.9 | 3.3e-31 | 255 | 312 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+++dp ++++tYegeH+h+ OMERI04G20100.1 255 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERATDDPAMLVVTYEGEHRHT 312 9************************9888****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.6E-19 | 209 | 251 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.5E-32 | 241 | 312 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.446 | 248 | 314 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-26 | 251 | 312 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-36 | 253 | 313 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-26 | 255 | 311 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MASSHTPQPP NPNRAQRTDR DLRPAAAANS GEPTMAVDLM GCYAPRRADD QLAIQEAATA 60 GLRSLEMLVS SLSSSCQAAG AHKASPQQQP FGEIADQAVS KFRKVISILD RTGHARFRRG 120 PVESSAPATI AATPPPPLPP APVAPALAPT SSQPQTLTLD FTKPNLTMSA ATSVTSTSFF 180 SSVTAGEGSV SKGRSLLSSG KPPLSGHKRK PCAGGHSEAT ANGGRCHCSK RRKNRVKRTI 240 RVPAISSKIA DIPPDEYSWR KYGQKPIKGS PYPRGYYKCS TVRGCPARKH VERATDDPAM 300 LVVTYEGEHR HTPGPLPAPP AAAVAAMPVS VAVSAGNGHV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-21 | 250 | 318 | 14 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-21 | 250 | 318 | 14 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00464 | DAP | Transfer from AT4G31550 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061266 | 0.0 | AK061266.1 Oryza sativa Japonica Group cDNA clone:006-212-C10, full insert sequence. | |||
GenBank | AK072938 | 0.0 | AK072938.1 Oryza sativa Japonica Group cDNA clone:J023149N23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633632.1 | 1e-163 | WRKY transcription factor WRKY51-like | ||||
Swissprot | Q9SV15 | 2e-97 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A0E0DHZ6 | 0.0 | A0A0E0DHZ6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI10G14590.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP617 | 38 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 1e-76 | WRKY DNA-binding protein 11 |