PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G18580.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 310aa MW: 33450.6 Da PI: 4.7833

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G18580.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.6	1.3e-35	11	102	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y ++ed++++e+isw+++g++fvv+ + efa+++Lpk+Fkhsnf+SFvRQLn+YgFkkv ++ weF+++ F++g+k+ll OMERI04G18580.1 11 FLTKTYAMVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADR---------WEFANDCFRRGEKHLLG 95 9**************************************************************999.........************* PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 i+r+k OMERI04G18580.1 96 GIQRRKG 102 **986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.8E-56	7	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	7.25E-35	7	100	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	4.6E-38	7	100	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.6E-31	11	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-19	11	34	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-19	49	61	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	50	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-19	62	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MASPAAGTPP FLTKTYAMVE DPSTDETISW NDSGTAFVVW RPAEFARDLL PKHFKHSNFS 60 SFVRQLNTYG FKKVVADRWE FANDCFRRGE KHLLGGIQRR KGSGTGGAGA APAGGIPTAI 120 PISSPPTSSG GEPAVSSSPP RGSAGIAAGV SGAVAELEEE NARLRRENAR LARELARARR 180 VCDGVRRLVS RYDHDHDHGG GEEEAGEGDV KPMLFGVAIG GKRSREENGE DEEEEEEEEE 240 GADEDGEDDE VEEEDDDERE RHAARRVPVR EGKVRRTTEL SDLDVLALSV RAAAAARPGG 300 ASRDRKSSVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-27	1	103	11	123	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY344483	0.0	AY344483.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636018.1	1e-152	heat stress transcription factor B-2a
Swissprot	Q7XRX3	1e-153	HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBL	A0A0E0DHC4	0.0	A0A0E0DHC4_9ORYZ; Uncharacterized protein
STRING	OMERI04G17830.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	2e-50	HSF family protein

Publications ? help Back to Top
Nakayama A, et al. Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice. BMC Plant Biol., 2013. 13: p. 150 [PMID:24093634]