 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OMERI04G17450.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C2H2 |
| Protein Properties |
Length: 311aa MW: 32690.3 Da PI: 7.9139 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OMERI04G17450.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.2 | 0.00013 | 5 | 26 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
+C+ C ++F ++ L H+r+H
OMERI04G17450.1 5 TCKLCYRRFGNPRALAGHMRSH 26
6********************9 PP
|
| 2 | zf-C2H2 | 11.6 | 0.00088 | 174 | 196 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++Cp C+k+F++ L H +H
OMERI04G17450.1 174 FQCPACKKVFRSYQALGGHRASH 196
89**********99999998887 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00355 | 0.099 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 8.974 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 3.67E-7 | 5 | 26 | No hit | No description |
| Pfam | PF13912 | 0.0045 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 3.67E-7 | 169 | 196 | No hit | No description |
| Pfam | PF13912 | 1.2E-11 | 173 | 198 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.026 | 174 | 196 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.286 | 174 | 196 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 176 | 196 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 88 | 238 | 258 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 2.5E-9 | 238 | 259 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MAKNTCKLCY RRFGNPRALA GHMRSHSVAA SRSQISSTSS ASTSVAVGDD DGGDAKRPIQ 60
GYVLREKPKR RVRLAESDFS DRESETEYYS SPPHGKRANT GSGDVEQVSS VSDAATSEED 120
VALSLMKLSR DTWPATPPPP PPYRLRGAGY DDGSDGGDAP PAPAAAAAQK RTRFQCPACK 180
KVFRSYQALG GHRASHMRGG RGGCCAPPPN PPPSPATPLQ PLPECDGGEE EGAKPHPHEC 240
PYCFRVFASG QALGGHKRSQ LCSAAAAAAS GDDLPATIKS NGFIDLNLPA PFDDVELSAV 300
SDPFLSSKPG S
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL606633 | 0.0 | AL606633.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence. |
| GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
