PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G14260.4

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 345aa MW: 36600.2 Da PI: 9.2281

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G14260.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.8	6.1e-06	296	322	6	34
HHHHHHHHHHHHHHHHHHHCTSCC.C...T CS HLH 6 nerErrRRdriNsafeeLrellPk.askap 34 +++Er RR ri +++ +L+ l+P+ + + OMERI04G14260.4 296 SIAERERRTRISEKLRKLQALVPNmD---K 322 689********************966...3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.753	290	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.58E-6	293	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.32E-5	294	328	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.4E-5	295	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MNPAPSRAPQ RQQRGGEMSA RYGGGLQFFA DAPPAGVEGG AATARTFFPV PGGGGEQQPP 60 ERAIRQQHYS GGSGAAEISL GHGHGGQHHF HQFGVEAKDG GGGGGGDQSG FLTRHNSSPP 120 GFFSSPVMDN GFSSSARPAG SSLGEVRHGA MSSSSNNNKK MKAPLSFASS RQGSGGLSQI 180 SEDGIPDLTD SIHGAAHHHV RSEENVSTHD HVVRSFSSGG FSIGSWEDSN SIVFSTSTGK 240 SGAHGNDDII ATLSNYESQL VAPREMAGVE KYLQMQHDQV PFRVRAKRGC ATHPRSIAER 300 ERRTRISEKL RKLQALVPNM DKTLKEDKEK CTCSCKQASR NRPAD

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MNPAPSRAPQ RQQRGGEMSA RYGGGLQFFA DAPPAGVEGG AATARTFFPV PGGGGEQQPP  60
ERAIRQQHYS GGSGAAEISL GHGHGGQHHF HQFGVEAKDG GGGGGGDQSG FLTRHNSSPP  120
GFFSSPVMDN GFSSSARPAG SSLGEVRHGA MSSSSNNNKK MKAPLSFASS RQGSGGLSQI  180
SEDGIPDLTD SIHGAAHHHV RSEENVSTHD HVVRSFSSGG FSIGSWEDSN SIVFSTSTGK  240
SGAHGNDDII ATLSNYESQL VAPREMAGVE KYLQMQHDQV PFRVRAKRGC ATHPRSIAER  300
ERRTRISEKL RKLQALVPNM DKTLKEDKEK CTCSCKQASR NRPAD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068039	0.0	AK068039.1 Oryza sativa Japonica Group cDNA clone:J013131B20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636683.1	0.0	transcription factor bHLH129
TrEMBL	A0A0E0DFI9	0.0	A0A0E0DFI9_9ORYZ; Uncharacterized protein
STRING	OS04T0489600-02	0.0	(Oryza sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	7e-26	bHLH family protein