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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI04G12400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 202aa MW: 23492.3 Da PI: 7.4372 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.4 | 2.5e-25 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr g+lKKA+ELSvLCda++ vi+fs++gk+ye + OMERI04G12400.1 10 RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVIVFSPHGKIYELA 58 8*********************************************965 PP | |||||||
2 | K-box | 58.6 | 2.7e-20 | 87 | 173 | 14 | 99 |
K-box 14 aeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 qq++ L++e++ Lq+++R + Ge d++ ++l eLq+Le++Le +++iRs+K++l+ ++ie l++ke l+ +n L++++ OMERI04G12400.1 87 PMVIQQDVLFLRREVDLLQNSLRYMYGEkDINHMNLGELQSLESNLEVWVNNIRSTKMQLMSREIEMLKNKEGILKAANDILQERII 173 45579**********************868****************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.3E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-27 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.24 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.15E-37 | 2 | 71 | No hit | No description |
PRINTS | PR00404 | 3.4E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-24 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-23 | 82 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.847 | 87 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLCD ADIGVIVFSP HGKIYELATN 60 GNMEGLIERY KCNLPEAQVE STEQNIPMVI QQDVLFLRRE VDLLQNSLRY MYGEKDINHM 120 NLGELQSLES NLEVWVNNIR STKMQLMSRE IEMLKNKEGI LKAANDILQE RIIEQTSILD 180 VRGNMMIPQV PFQLTTESNY YF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-15 | 1 | 70 | 1 | 69 | MEF2C |
5f28_B | 9e-15 | 1 | 70 | 1 | 69 | MEF2C |
5f28_C | 9e-15 | 1 | 70 | 1 | 69 | MEF2C |
5f28_D | 9e-15 | 1 | 70 | 1 | 69 | MEF2C |
6byy_A | 9e-15 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 9e-15 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 9e-15 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 9e-15 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 1e-14 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 1e-14 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 1e-14 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 1e-14 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194477.1 | 1e-119 | MADS-box transcription factor 26-like | ||||
Refseq | XP_020194478.1 | 1e-119 | MADS-box transcription factor 26-like | ||||
Swissprot | A2YQK9 | 5e-75 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 5e-75 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A0E0DEQ9 | 1e-147 | A0A0E0DEQ9_9ORYZ; Uncharacterized protein | ||||
STRING | OBART04G13770.1 | 1e-148 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 7e-60 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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