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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI04G12360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 182aa MW: 19746.3 Da PI: 5.3535 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2.1e-18 | 8 | 58 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++k +g+Wv+eIr p g ++r++lg+f +ae+Aa a++ a+++l+g OMERI04G12360.1 8 CQYRGVRRRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 58 68*****998.**********8...325*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.24E-30 | 8 | 66 | No hit | No description |
Pfam | PF00847 | 5.0E-12 | 8 | 58 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-22 | 9 | 67 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.709 | 9 | 66 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-31 | 9 | 66 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-37 | 9 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-10 | 10 | 21 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-10 | 32 | 48 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MAAAGVGCQY RGVRRRKWGK WVSEIRQPGT KTRIWLGSFE SAEMAAVAHD VAALRLRGRD 60 AQLNFPGSVD RLPRPASSRP GDIRAAAAEA ADRVRREPAL VVVRGAAAAV CGGELAAARW 120 AGVEVEVEQQ LGGSDEEFEV DSPRLWAEMA EAMLLDPPVW AVDVSEMEGP HCWAHGSLWD 180 AY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-17 | 7 | 70 | 3 | 67 | ATERF1 |
3gcc_A | 2e-17 | 7 | 70 | 3 | 67 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL731606 | 0.0 | AL731606.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058G03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194473.1 | 1e-75 | ethylene-responsive transcription factor ERF021-like | ||||
TrEMBL | A0A0E0DEQ2 | 1e-125 | A0A0E0DEQ2_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI04G11400.1 | 1e-126 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 5e-26 | ERF family protein |