PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G11480.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 708aa MW: 75242.3 Da PI: 5.9119

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G11480.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.2	1.4e-13	133	181	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h Er RR++++++fe L l+P++ +K +Ka+i+e +++YIk+Lq OMERI04G11480.1 133 KMHVLTERERRKEMKNKFEILHALIPNL----PEKTDKATIVEATINYIKNLQ 181 579999*******************6....39****************9 PP
2	HLH	33.5	7.4e-11	492	535	8	55
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er RR+++++ f++L llPk + +K +Ka+i+ +A+ YIk L+ OMERI04G11480.1 492 TERERRKKMKNMFSTLHGLLPKiP-----GKADKATIVGEAIGYIKTLE 535 7*******************88.....9**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.945	130	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.65E-14	133	185	No hit	No description
SuperFamily	SSF47459	1.57E-15	133	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.5E-11	134	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-15	134	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.8E-11	136	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.414	484	534	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-14	488	545	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.69E-10	489	539	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-13	489	545	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-7	492	540	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-8	492	535	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence Send to blast
MSQEGPNNLP QGTQETHGRP FTIATNTPLG LTKMGYSNSR KSDENNTSSK PASPVVYSDV 60 IEIKETWENV VVADEEGEGG EDGFASDASE SKSKSSSDEV DYELLDLLAG VSAGCSGGNN 120 NNEVKNFAYA DHKMHVLTER ERRKEMKNKF EILHALIPNL PEKTDKATIV EATINYIKNL 180 QDKIHKMEML KVEREHAIAL AAAAAATAAA AADTALQAPP PSSSEENEEE HDAVVAAATR 240 EMALADMVHA WEQQQVAATG GHAVPPPPPA ASLQTWTGPN MTASLTGDDG FITLSLPHQG 300 GQKNLVAGAV SVLERHHIDV VTATVSASEQ GDNLISLHCH LGPGSSSSQN LTPLDKFKLA 360 MSEVMLWSQH LHLLVYPMSQ EGADLSQDVD ESPDHTVVAT TNNLVRSIKA ERSNSSSSSG 420 KPVETNIGLK VASPTVFGFN TKIEGTGKNT AVKREEGEGG GRVGISNGVS TQGTNGKGKS 480 AMDMEHALHI WTERERRKKM KNMFSTLHGL LPKIPGKADK ATIVGEAIGY IKTLEDVVQK 540 LETIKTERVR AHQWAAAAAA AAAVAANGGG EGSSHSQAPC HAATAVTVAA VAEPAPAANA 600 QPQKKAAARA APTLQTWSAP NITLTMAGVD AFINMCLPRQ RASFTTVAFV LEKHQIDVVT 660 STISADQDKS LFSVHVRLNE ASLQSTEGLT PEAKYKLAVS ELMVRLAE

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence Send to blast

MSQEGPNNLP QGTQETHGRP FTIATNTPLG LTKMGYSNSR KSDENNTSSK PASPVVYSDV  60
IEIKETWENV VVADEEGEGG EDGFASDASE SKSKSSSDEV DYELLDLLAG VSAGCSGGNN  120
NNEVKNFAYA DHKMHVLTER ERRKEMKNKF EILHALIPNL PEKTDKATIV EATINYIKNL  180
QDKIHKMEML KVEREHAIAL AAAAAATAAA AADTALQAPP PSSSEENEEE HDAVVAAATR  240
EMALADMVHA WEQQQVAATG GHAVPPPPPA ASLQTWTGPN MTASLTGDDG FITLSLPHQG  300
GQKNLVAGAV SVLERHHIDV VTATVSASEQ GDNLISLHCH LGPGSSSSQN LTPLDKFKLA  360
MSEVMLWSQH LHLLVYPMSQ EGADLSQDVD ESPDHTVVAT TNNLVRSIKA ERSNSSSSSG  420
KPVETNIGLK VASPTVFGFN TKIEGTGKNT AVKREEGEGG GRVGISNGVS TQGTNGKGKS  480
AMDMEHALHI WTERERRKKM KNMFSTLHGL LPKIPGKADK ATIVGEAIGY IKTLEDVVQK  540
LETIKTERVR AHQWAAAAAA AAAVAANGGG EGSSHSQAPC HAATAVTVAA VAEPAPAANA  600
QPQKKAAARA APTLQTWSAP NITLTMAGVD AFINMCLPRQ RASFTTVAFV LEKHQIDVVT  660
STISADQDKS LFSVHVRLNE ASLQSTEGLT PEAKYKLAVS ELMVRLAE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107268	0.0	AK107268.1 Oryza sativa Japonica Group cDNA clone:002-125-H08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636599.1	1e-174	transcription factor bHLH95
TrEMBL	A0A0E0DEA2	0.0	A0A0E0DEA2_9ORYZ; Uncharacterized protein
STRING	ORUFI04G14020.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2005	36	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	1e-22	bHLH family protein