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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI04G09500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 192aa MW: 20347.2 Da PI: 6.9226 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.7 | 3.2e-11 | 72 | 146 | 4 | 84 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 ++ +s+v ++v+p++fa + ++ t + +grsW +++ ++++ l++GW++F+ +n+L+ gD +vF+l OMERI04G09500.1 72 IMCKSHVQPPFQVVVPRSFAPLL---PSRT-TPATLSWRGRSWGMRF--TGGRLIQRLEAGWRGFAVDNDLRLGDGCVFEL 146 677899999999********433...3333.44446789********..88888899**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.02E-14 | 66 | 147 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.5E-15 | 66 | 170 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.63E-12 | 67 | 169 | No hit | No description |
PROSITE profile | PS50863 | 12.153 | 69 | 171 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-8 | 70 | 146 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MASDPTELRH SSPECSGDAG AEDPAAAAAA LDAAEKSGGD IAEAAPPRPP EPEKVAHHGV 60 LPLLGKPYFT CIMCKSHVQP PFQVVVPRSF APLLPSRTTP ATLSWRGRSW GMRFTGGRLI 120 QRLEAGWRGF AVDNDLRLGD GCVFELLLVV GGGGGGEQER VEFRVQVLRA EIPARIRGRA 180 GGYTSAAPIV ID |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119999 | 0.0 | AK119999.1 Oryza sativa Japonica Group cDNA clone:002-184-H05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635251.1 | 1e-99 | B3 domain-containing protein Os04g0386900 | ||||
Swissprot | Q7XLP4 | 1e-100 | Y4869_ORYSJ; B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | A0A0E0DDE4 | 1e-135 | A0A0E0DDE4_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI04G08440.1 | 1e-118 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 |
Publications ? help Back to Top | |||
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