PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G07880.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 480aa MW: 50189.6 Da PI: 6.9807

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G07880.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.5	6.4e-10	307	354	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq OMERI04G07880.1 307 SHSLAERVRRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 354 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.59E-11	301	358	No hit	No description
SuperFamily	SSF47459	7.98E-17	301	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-16	303	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.612	303	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-7	307	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-9	309	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MCILGGICGF QFTFLPCSCR HLFPTHQYGY FPPPFTNHFL YNGQPPPPPL PLSSSSTLPR 60 ATPPPTTMAD EHFFPAGDYF SSGAGTGGAA YGTMTMMPPW AVAAAEQMMM MAPAAAAAEF 120 DSALSSLVSS PQGGGGDEMA AIGDLIGRLG SICSHGASAN NSCYSTPLSS PPRAAPPPPF 180 RGYAAAMDAA GGRLSRVSSS KSLGGAAAAL DSSEADMNPT TAAAADQPSK PSAAAARKRK 240 SSAKPKASSS SLPTATATTN ASPKRSKVAA GAGEDGDGDA AAEEEEKPEP AKGYIHVRAR 300 RGQATDSHSL AERVRRERIS ERMKLLQSLV PGCNKITGKA LMLDEIINYV QSLQRQVEFL 360 SMKLATMNPQ LDFDSRYMPS KDMSHMPVPA YPSGDPTTTT AFSYTGSPVA ADPFAAYNCW 420 ELDLHTAMQM GVTATGLSQD GPITTMAPSP SPLPHHPPLH GFYGGQQQQG ATVNHMKAEP

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MCILGGICGF QFTFLPCSCR HLFPTHQYGY FPPPFTNHFL YNGQPPPPPL PLSSSSTLPR  60
ATPPPTTMAD EHFFPAGDYF SSGAGTGGAA YGTMTMMPPW AVAAAEQMMM MAPAAAAAEF  120
DSALSSLVSS PQGGGGDEMA AIGDLIGRLG SICSHGASAN NSCYSTPLSS PPRAAPPPPF  180
RGYAAAMDAA GGRLSRVSSS KSLGGAAAAL DSSEADMNPT TAAAADQPSK PSAAAARKRK  240
SSAKPKASSS SLPTATATTN ASPKRSKVAA GAGEDGDGDA AAEEEEKPEP AKGYIHVRAR  300
RGQATDSHSL AERVRRERIS ERMKLLQSLV PGCNKITGKA LMLDEIINYV QSLQRQVEFL  360
SMKLATMNPQ LDFDSRYMPS KDMSHMPVPA YPSGDPTTTT AFSYTGSPVA ADPFAAYNCW  420
ELDLHTAMQM GVTATGLSQD GPITTMAPSP SPLPHHPPLH GFYGGQQQQG ATVNHMKAEP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO681395	0.0	FO681395.1 Oryza rufipogon (W1943) Awn-1(An-1) full-length cDNA sequence: OR_W1943_cDNA_An-1, PCR product.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635665.2	0.0	LOW QUALITY PROTEIN: transcription factor bHLH62
Swissprot	Q9SRT2	5e-61	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A0E0DCT9	0.0	A0A0E0DCT9_9ORYZ; Uncharacterized protein
STRING	OMERI04G06980.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12547	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-45	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]