PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G38170.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 508aa    MW: 55499.4 Da    PI: 4.7268
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G38170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.3e-35401312102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+ye+++d++++ ++sw   +nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+
  OMERI03G38170.1  40 FLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLK 124
                      9*********************99*****************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  OMERI03G38170.1 125 TINRRKP 131
                      *****86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.52E-3635129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-6136129IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3837129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.6E-3140129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-194063IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-1991103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MEATVAAAAA AAAAGTVTTA VAPPPGSAVS NGVATAPPPF LMKTYEMVDD PATDAVVSWG  60
PGNNSFVVWN TPEFARDLLP KYFKHSNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK  120
HLLKTINRRK PTHGNNQVQQ PQLPAAPVPA CVEVGKFGME EEIEMLKRDK NVLMQELVRL  180
RQQQQTTDHQ LQTLGKRLQG MEQRQQQMMS FLAKAMHSPG FLAQFVQQNE NSRRRIVASN  240
KKRRLPKQDG SLDSESASLD GQIVKYQPMI NEAAKAMLRK ILKLDSSHRF ESMGNSDNFL  300
LENYMPNGQG FDSSSSTRNS GVTLAEVPAN SGLPYVATSS GLSAICSTST PQIQCPVVLD  360
NGIPKEVPNM SAVPSVPKAV APGPTDINIP EFPDLQDIVA EENVDIPGGG FEMPGPEGVF  420
SLPEEGDDSV PIETDEILYN DDTQKLPGII DSFWEQFLVA SPLSVDNDEV DSGVLDQKET  480
QQGNGWTKAE NMANLTEQMG LLSSHHTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-26101291129Heat shock factor protein 1
5d5v_B2e-26101291129Heat shock factor protein 1
5d5v_D2e-26101291129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004300.0AK100430.1 Oryza sativa Japonica Group cDNA clone:J023088F14, full insert sequence.
GenBankAK1061180.0AK106118.1 Oryza sativa Japonica Group cDNA clone:001-207-E07, full insert sequence.
GenBankAY3444850.0AY344485.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF3 mRNA, complete cds.
GenBankEU8469830.0EU846983.1 Oryza sativa Japonica Group clone KCS225D11 heat shock factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630421.10.0heat stress transcription factor A-1
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A0E0D9P90.0A0A0E0D9P9_9ORYZ; Uncharacterized protein
STRINGONIVA03G43540.10.0(Oryza nivara)
STRINGORGLA03G0383200.10.0(Oryza glaberrima)
STRINGOBART03G41440.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-124heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]