PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G35360.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 259aa    MW: 26999.6 Da    PI: 6.1599
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G35360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.92.3e-057093326
                     HHHHHHHHHHHHHHHHHHHHHHCT CS
              HLH  3 rahnerErrRRdriNsafeeLrel 26
                     r+h e+E+rRR+ri+s +++Lr +
  OMERI03G35360.1 70 RNHREAEKRRRERIKSHLDRLRAI 93
                     78*******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.16E-870115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MFPVEVAAAA GAGRMQGEAV VPMMLPPFFM DSGIWPAAAA AGGVVDVAAS AEDEAAAAAA  60
AQDRALAASR NHREAEKRRR ERIKSHLDRL RAIDKASLLA KAVERVRDLK QRMAGIGEAA  120
PAHLFPTEHD EIVVLASGGG GGVGGAAAVF EASVCCDDRS DLLPELIETL RALRLRTLRA  180
EMATLGGRVR NVLVLARDGG AGEGGDGDGD RADYSAVSND GGDFLKEALR ALVERPGAAA  240
GDRPKRRRVV SDMNMQAAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244248KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629146.15e-92transcription factor bHLH106
SwissprotO806746e-41BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A0E0D8L91e-178A0A0E0D8L9_9ORYZ; Uncharacterized protein
STRINGOMERI03G34850.11e-179(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.14e-16bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]