PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G34490.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 359aa    MW: 40384 Da    PI: 5.6099
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G34490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.7e-36401312102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d++++ ++sws+++nsfvv+d++ f + +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+
  OMERI03G34490.1  40 FLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQKHLLK 124
                      9********************999*****************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +ikr+k 
  OMERI03G34490.1 125 SIKRRKP 131
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-3936129IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.2E-3536129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-6236129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-204063IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.4E-3240129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-2091103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDYRVVNPVK VESGPSTGVA ANGQPPRPMD GLADGGPPPF LTKTYDMVDD PTTDAVVSWS  60
ATNNSFVVWD PHLFGNVLLP RYFKHNNFSS FVRQLNTYGF RKVDPDKWEF ANEGFLRGQK  120
HLLKSIKRRK PPNSSPSQQS LGSFLEVGHF GYEGEIDQLK RDKHLLMAEV VKLRQEQQNT  180
KSDLQAMEQK LQGTEQKQQH MMAFLARVMH NPEFIHQLFS QSEMRKELEE FVSKKRRRRI  240
DQGPELDSMG TGSSPEQVSQ VMFEPHDPVD SLFNGVPSDL ESSSVEANGG KAQQDVASSS  300
SEHGKIKPSN GELNEDFWED LLHEGGLDDD TRNPAIQDDM NLLSQKMGYL NSSSTKSAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-273812918120Heat shock factor protein 1
5d5u_B6e-273812927129Heat shock factor protein 1
5d5v_B6e-273812927129Heat shock factor protein 1
5d5v_D6e-273812927129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128LKSIKRR
2233238KKRRRR
3234239KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0686600.0AK068660.1 Oryza sativa Japonica Group cDNA clone:J013162K14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630486.10.0heat stress transcription factor A-2e
SwissprotQ6F3880.0HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLA0A0E0D8620.0A0A0E0D862_9ORYZ; Uncharacterized protein
STRINGOMERI03G33920.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-101heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]