PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G32400.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 304aa    MW: 33438.6 Da    PI: 8.1551
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G32400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.6e-102202601055
                      HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      rrRR+riN ++  L++l+P+ +      K++ +++Le+Av+Y+k Lq
  OMERI03G32400.1 220 RRRRERINGRLRILQKLVPNgN------KVDISTMLEEAVHYVKFLQ 260
                      9*******************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-13208270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.246210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-11214264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-7220260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-6226264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MFPRSKKAPL FSLHCRMSQD ERQQPGQVQW TPAPEEKSEI AVQFFTAPYH CQNGQLDHGE  60
HHALGGIGAC SSVHWQPDRG TCYWPPPLSG DGGGGSSGTG EGGYIGECCY YAGEPDVPIG  120
LDLLVGDNDG AGVVLRNAAP QAKRRTDQAG HGGDLGRQKK KARVSDKRNQ ESMQSGSCSD  180
NESNCSQVNR RTVDRVAGGE NGKVPARRRS ATIAQSLYAR RRRERINGRL RILQKLVPNG  240
NKVDISTMLE EAVHYVKFLQ LQIKVDIQIV CHDQMLSSDE LWMYAPIVYN GMDLGIDLNI  300
SPPR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206222RRRSATIAQSLYARRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631804.10.0transcription factor BHLH089-like isoform X1
RefseqXP_025879771.10.0transcription factor BHLH089-like isoform X1
TrEMBLA0A0E0D7930.0A0A0E0D793_9ORYZ; Uncharacterized protein
STRINGOMERI03G31670.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144452123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-33bHLH family protein