PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G31930.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 180aa MW: 19549.5 Da PI: 10.1511 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 59 | 9.1e-19 | 95 | 137 | 17 | 59 |
T-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 17 gsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 g + rsYY+Ct gC+v+k++er++ dpk+v +tY+g+Hnh+ OMERI03G31930.6 95 GIPLVRSYYKCTADGCNVRKQIERASADPKCVLTTYTGRHNHD 137 66889*************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.9E-17 | 87 | 139 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.0E-11 | 91 | 138 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-14 | 94 | 139 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.345 | 95 | 139 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-12 | 95 | 137 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006452 | Biological Process | translational frameshifting | ||||
GO:0045901 | Biological Process | positive regulation of translational elongation | ||||
GO:0045905 | Biological Process | positive regulation of translational termination | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003746 | Molecular Function | translation elongation factor activity | ||||
GO:0043022 | Molecular Function | ribosome binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MLSVWPRAKE EYLNGQAKIK NSMQTCLLQL GCMCMKKNIL PPLTLAKSLS RSSSSESAES 60 RMLTESYHAS SQITAKAMAY KSKETDKRKG KREMGIPLVR SYYKCTADGC NVRKQIERAS 120 ADPKCVLTTY TGRHNHDPPG RPAAAAANLQ MPGPAAMSLA GGGTAHQQPS GGARQMKEET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-15 | 95 | 139 | 33 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-15 | 95 | 139 | 33 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 1e-121 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0D735 | 1e-130 | A0A0E0D735_9ORYZ; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 4e-17 | WRKY DNA-binding protein 3 |