PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G31930.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 1402aa    MW: 152745 Da    PI: 6.666
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G31930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY894e-2811611217259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59  
                       +DgynWrKYGqK+ k++e prsYY+Ct  gCpvkk vers+ d+ + eitY+g+H h+
  OMERI03G31930.1 1161 KDGYNWRKYGQKQLKDAESPRSYYKCTRDGCPVKKIVERSS-DGCIKEITYKGRHSHP 1217
                       8****************************************.***************7 PP
2WRKY101.35.9e-3213011359159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59  
                       ldDgy+WrKYGqK+vkg++ prsYY+Ct  gC+v+k++er++ dpk+v +tY+g+Hnh+
  OMERI03G31930.1 1301 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADGCNVRKQIERASADPKCVLTTYTGRHNHD 1359
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF508148.12E-2190185IPR011038Calycin-like
Gene3DG3DSA:2.40.128.201.5E-3196269IPR012674Calycin
PfamPF122044.1E-14100421IPR022017Domain of unknown function DUF3598
SuperFamilySSF508148.12E-21212269IPR011038Calycin-like
SuperFamilySSF508142.17E-29285426IPR011038Calycin-like
Gene3DG3DSA:2.40.128.206.3E-42286426IPR012674Calycin
SuperFamilySSF508148.12E-21512607IPR011038Calycin-like
Gene3DG3DSA:2.40.128.201.5E-31518691IPR012674Calycin
PfamPF122044.1E-14522843IPR022017Domain of unknown function DUF3598
SuperFamilySSF508148.12E-21634691IPR011038Calycin-like
SuperFamilySSF508142.35E-29707848IPR011038Calycin-like
Gene3DG3DSA:2.40.128.206.2E-42708848IPR012674Calycin
Gene3DG3DSA:2.20.25.808.4E-2611551219IPR003657WRKY domain
PROSITE profilePS5081122.76811551219IPR003657WRKY domain
SuperFamilySSF1182901.57E-2211591219IPR003657WRKY domain
SMARTSM007749.8E-3111601218IPR003657WRKY domain
PfamPF031062.0E-2111611217IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-3312861361IPR003657WRKY domain
SuperFamilySSF1182902.22E-2712931361IPR003657WRKY domain
PROSITE profilePS5081136.05912961361IPR003657WRKY domain
SMARTSM007744.4E-3613011360IPR003657WRKY domain
PfamPF031061.1E-2313021359IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006452Biological Processtranslational frameshifting
GO:0045901Biological Processpositive regulation of translational elongation
GO:0045905Biological Processpositive regulation of translational termination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003746Molecular Functiontranslation elongation factor activity
GO:0043022Molecular Functionribosome binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1402 aa     Download sequence    Send to blast
MGRCSILRRP LHSSPLRSLC SAMAEALVAV LRLAASAAAT ARPQSRSGRH GSCAARVPCP  60
GPSPFRRGRL CARAAVAGPP EVDDDDAMTI DNLRRFFDVN VGKWNGAFYQ FDAHGRVLQG  120
ISTRLSVSTY GEDDLISLLQ SLYIKQASSQ ISFVDEEDSE EWVEYKIKET NMFTVDKYQQ  180
VGFFQEEKAF ALRYQTAGML ETVLRAGVLG EDDTGEESPK NLKIPSRKPS IVCENCLYSL  240
EGNGRVRAFH IMDPKGVLDM LIIFHEKQGS EVPLIYFSDD ADITNNDRTA PLLGRWEGRS  300
VTKRSGVYGA TLSEADTVVL LEKDRNGQLI LDNMSTKSGS STTTTVHWTG SANNNLLQFD  360
GGYEMTLLPG GMYMGYPTDI GKIVNDMDSF HLEFCWMESP GKRQRLVRTY DSAGLAVSST  420
YFFETKLVTR RPLHSSPLRS LCSAMAEALV AVLRLAASAA ATARPQSRSG RHGSCAARVP  480
CPGPSPFRRG RLCARAAVAG PPEVDDDDAM TIDNLRRFFD VNVGKWNGAF YQFDAHGRVL  540
QGISTRLSVS TYGEDDLISL LQSLYIKQAS SQISFVDEED SEEWVEYKIK ETNMFTVDKY  600
QQVGFFQEEK AFALRYQTAG MLETVLRAGV LGEDDTGEES PKNLKIPSRK PSIVCENCLY  660
SLEGNGRVRA FHIMDPKGVL DMLIIFHEKQ GSEVPLIYFS DDADITNNDR TAPLLGRWEG  720
RSVTKRSGVY GATLSEADTV VLLEKDRNGQ LILDNMSTKS GSSTTTTVHW TGSANNNLLQ  780
FDGGYEMTLL PGGMYMGYPT DIGKIVNDMD SFHLEFCWME SPGKRQRLVR TYDSAGLAVS  840
STYFFETKRL SSLKPHHLRR RVGDHGRTPD LSNANSVAGE GEGGDRFRRR RVAAATAGAI  900
DRAKSPEEGD GFRWFWKYSA QAVGASQSNP NTSLSDPLSW SAAVVVIDRE ALPLHKQRKL  960
RRAAAAAMAD RRCGDGGDGM QQQPFTSPGQ ERVFDGGGGG VPGQVAAPYG SDFDQSSYMA  1020
LLAAGAVGAG VGVQPTAEPW AVEEDVAAAP PGISLAPQFS MANYAPPPSY QHPATLVSPP  1080
LAAGLHPYPP YLHGVDAPPP QWPPRPAPPP SFSVLDLAAA APPHEQRHSM QQLLLRAAAF  1140
GGGMHAAAAP AAAAAIEQPA KDGYNWRKYG QKQLKDAESP RSYYKCTRDG CPVKKIVERS  1200
SDGCIKEITY KGRHSHPRPV EPRRGGAAGS SSSAMAAGTD HNAGAAAVDE DDPSDDDDTL  1260
LHEDDDDGEE GHDRGVDGEI GQRVVRKPKI ILQTRSEVDL LDDGYRWRKY GQKVVKGNPR  1320
PRSYYKCTAD GCNVRKQIER ASADPKCVLT TYTGRHNHDP PGRPAAAAAN LQMPGPAAMS  1380
LAGGGTAHQQ PSGGARQMKE ET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yvf_A1e-1458584815357BFA1
5yvf_B1e-1458584815357BFA1
5yvf_C1e-1458584815357BFA1
5yvf_D1e-1458584815357BFA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418520.0AY341852.1 Oryza sativa (japonica cultivar-group) WRKY11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630963.20.0uncharacterized protein LOC4334178
TrEMBLA0A0E0D7300.0A0A0E0D730_9ORYZ; Uncharacterized protein
STRINGOMERI03G31200.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.17e-36WRKY DNA-binding protein 3