PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G29530.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 360aa    MW: 39938.9 Da    PI: 6.1329
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G29530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-10189237355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  OMERI03G29530.1 189 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 237
                      58**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.61E-11184241No hitNo description
SuperFamilySSF474591.23E-16184253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16186254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.447186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-8189237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MHEHVKLVVG TCRGSCDLAV REQGKIGVSE QLEMYSGQQS DQCPGPNSGK EFLEVNWDSV  60
ALHQKMGYNS GAFGFQAYPM LLEDREGLYR SPNGTFCQNI QLSDDHSSGV KRRKGINDHI  120
SLLNPSASSR IQNIGDQQTE VSSQQERISM EEDNQKSCSK MQSKEDSSDG DGTKEDYVHV  180
RAKRGQATNS HSLAERLRRK KISERMKLLQ DLVPGCSKIT GKAVMLDEII NYVQSLQRQV  240
EFLSMKLATV NPELSFDIEQ ILSKQMMLSQ DRHLAFYGVD PGSSALIAHF NQGIMQPEML  300
CNVSNPADVL QGTTIHDIST VNQIPAMWEG LQNIPHLNYN PGGAMAEGST NNSGSMKIEK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632666.10.0transcription factor bHLH74
RefseqXP_015632667.10.0transcription factor bHLH74
RefseqXP_025879964.10.0transcription factor bHLH74
RefseqXP_025879965.10.0transcription factor bHLH74
TrEMBLA0A0E0D6290.0A0A0E0D629_9ORYZ; Uncharacterized protein
STRINGOMERI03G28620.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.15e-54bHLH family protein