PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G28740.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 241aa    MW: 24574.3 Da    PI: 8.0118
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G28740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer871.9e-271262457
      ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                      +Y+eC++NhAa+lG++a DGC+E++p+   +g++a+l CaACgCHRnFHR++ 
  OMERI03G28740.1 12 EVYRECMRNHAAKLGTYANDGCCEYTPD---DGHPAGLLCAACGCHRNFHRKDL 62
                     68*************************8...789******************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.3E-221361IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-221461IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.6191461IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.0E-211461IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.17E-16110185IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-27113185IPR009057Homeodomain-like
TIGRFAMsTIGR015656.3E-27123184IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEQQQQQERP REVYRECMRN HAAKLGTYAN DGCCEYTPDD GHPAGLLCAA CGCHRNFHRK  60
DLLDGRAAAA AGGAGGAGVG VAPMLPAPGG GGPPGYMHMA AMGGAVGGGG GGVDGSGGSG  120
GRRRTRTKFT EEQKARMLRF AERLGWRMPK REPGRAPGDD EVARFCREIG VNRQVFKVWM  180
HNHKAGGGGG GGGSGGPGAG GGAQTSSSTT RGGGDVGVGL SPAMGGDGED DEEVRGSEMC  240
M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-181221911780ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0915320.0AC091532.14 Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630147.11e-117zinc-finger homeodomain protein 11
SwissprotA2XLF41e-118ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV51e-118ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A0E0D5R91e-169A0A0E0D5R9_9ORYZ; Uncharacterized protein
STRINGOMERI03G27850.11e-170(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-31homeobox protein 22