PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G26850.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 901aa    MW: 96411.2 Da    PI: 8.6926
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G26850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.5e-07463483526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f++ G C++Gd C +aHg
  OMERI03G26850.1 463 PCPDFRK-GVCRRGDMCEYAHG 483
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5029716.467245320IPR020683Ankyrin repeat-containing domain
SMARTSM002480.019245275IPR002110Ankyrin repeat
PfamPF127961.2E-10245314IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.8E-15245323IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.9E-17246323IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.876280315IPR002110Ankyrin repeat
SMARTSM002480.039280312IPR002110Ankyrin repeat
SMARTSM003561.1E-5458484IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4462485IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375463485IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4463483IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4491521IPR000571Zinc finger, CCCH-type
SMARTSM0035637493516IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
MCLALLTRFF TPCLTTVPHP PVIIAADRDR GRKRVRTAGT PKVSTPTTRF LSHHFPLFLL  60
PPSSPPPLAL SRFRAPCFSS SPSNREKQAR SGAQSLPSPP NASASERRAP FLVWERDLWC  120
FLSPRFASSW GLRRSSGRFG RCWRVLPIRQ APMNGTPISA SAAAGVDGVG AAVAVAAATK  180
KSAAAAAAVA EMAKTLTVDT DDAFAGLLEL AADDDAEGLR RALERAPPAA ADEAGLWYGR  240
RKVLEHRTPL MVAATYGSLA VLRLLLSLPS VDVNRRCGSD GTTALHCAAS GGSPSCVEAV  300
KLLLAAGADA DATDASGYRP ADVISVPPKM FDAKIALQDL LGCPKAGHGI LRVVTRAANS  360
MSSPVSSPTA EDARSPSAAV MMTTKFADLP RVVTSEKKEY PVDPSLPDIK NSIYASDEFR  420
MYSFKIRPCS RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPDFRKG VCRRGDMCEY  480
AHGVFECWLH PAQYRTRLCK DGTSCNRRVC FFAHTTDELR PLYVSTGSAV PSPRASATAT  540
MEMAAAMGLM PGSPSSVSAV MSPFTPPMSP SGNGMPPSLG WQQPNVPTLH LPGSSLQSSR  600
LRTSLSARDM PADDYSLMQD IDSQLINDLC YSRIGSSTGN HTSRTKSLNP SNLDDLFSAE  660
MVSSPRYSNA DQGGMFSPSH KAAFLNQFQQ QQQALLSPIN TVFSPKSVDN QQLPLHSSLL  720
QASLGISSPG RMSPRCVESG SPMNSHLAAA LAQREKQQQT MRSLSSRDLG PSAARASGVV  780
GSPLSSSWSK WGSPSGTPDW GVNGEELGKL RRSSSFELRS GGDDPDLSWV HTLVKESPPE  840
KQVTTAESIN SVGPSPLMPP SVSNGEGSSL NAPLDGHDQA AVIGALLEQM QLDQHIGSLA  900
T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632054.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A0E0D4Z40.0A0A0E0D4Z4_9ORYZ; Uncharacterized protein
STRINGORGLA03G0281500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-180CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]