PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G25470.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 364aa    MW: 40372.6 Da    PI: 8.2984
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G25470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.61.4e-102542862355
                      SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +yps++e++ LA+++gL+++qV++WF N+R ++
  OMERI03G25470.1 254 PYPSETEKAALAESTGLDKKQVTNWFINQRKRH 286
                      8*****************************885 PP
2ELK31.93e-11206225322
              ELK   3 KhqLlrKYsgyLgsLkqEFs 22 
                      + +L++KYsgyL+sL++E+s
  OMERI03G25470.1 206 RTHLMNKYSGYLNSLWTEIS 225
                      679****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-1967111IPR005540KNOX1
PfamPF037901.2E-1969105IPR005540KNOX1
SMARTSM012561.2E-27122173IPR005541KNOX2
PfamPF037911.2E-21126171IPR005541KNOX2
PROSITE profilePS512138.748204224IPR005539ELK domain
SMARTSM011881.6E-4204225IPR005539ELK domain
PfamPF037891.3E-7206225IPR005539ELK domain
SMARTSM003895.8E-10227293IPR001356Homeobox domain
CDDcd000861.04E-11228290No hitNo description
SuperFamilySSF466894.71E-17228297IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-23233290IPR009057Homeodomain-like
PfamPF059201.9E-16246285IPR008422Homeobox KN domain
PROSITE profilePS5007111.677254289IPR001356Homeobox domain
PROSITE patternPS000270264287IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEQFHLLASG GGSKASTTII PLCLSRDHAS TSSPSPAAAV APPAPPPPAA SEQSSHGSGA  60
GLQSSEAMIK AKIMSHPLYP SLLRAFVDCK KVGAPPEVVG RLSSLAVVTD ELESYSGDRW  120
QPAQQPAADP ELDQFMETYC YMLTRYGQEL ARPIQEAEEF FRGIEEQIDS LALDEDVRYD  180
YEDEVAGGLP EKIAAFGENE VTTTTRTHLM NKYSGYLNSL WTEISNKKKN RTGHLPRDAR  240
HKFLQWWHLH YRWPYPSETE KAALAESTGL DKKQVTNWFI NQRKRHWKPK PAAAMDAGFL  300
HPRYGGASSS SSPAAALRVE DGGGGRIGCL NIPTWKYRFL QATLLRRLLS TKIIFTNSYG  360
ARYK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6950040.0HQ695004.1 Oryza sativa fused compound leaf 2 (FCL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879711.10.0putative homeobox protein knotted-1-like 5
SwissprotQ75LX90.0KNOS5_ORYSJ; Putative homeobox protein knotted-1-like 5
TrEMBLA0A0E0D4E60.0A0A0E0D4E6_9ORYZ; Uncharacterized protein
STRINGORUFI03G30320.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-64KNOTTED-like from Arabidopsis thaliana