PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

OMERI03G25120.3

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 216aa MW: 21900.2 Da PI: 4.1543

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G25120.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	68.5	1.4e-21	74	130	16	81
TTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEE CS HSF_DNA-bind 16 keliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweF 81 +++isw+++g++fvv+ + efa+++Lpk+Fk +nf+SFvRQLn+YgF ++ ++ weF OMERI03G25120.3 74 DDIISWNDDGSTFVVWRPAEFARDLLPKFFKRNNFSSFVRQLNTYGFGNIVPDR---------WEF 130 79*********************************************9988776.........555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.2E-20	67	147	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.5E-23	73	134	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	7.89E-20	74	133	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.1E-18	74	132	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.2E-7	98	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.2E-7	111	123	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MDLELELQGG RCRETLVSEL GVRVGVAAEN GLAAVAGGRA GAGSPLRGVV LLSSSSEGGG 60 EELVSSNAGV FSGDDIISWN DDGSTFVVWR PAEFARDLLP KFFKRNNFSS FVRQLNTYGF 120 GNIVPDRWEF ANDASGEGNG GCSVTPPTPA TTTTGAVTVA AAIPMALPVT TRDGSQVLSG 180 EEQIISSSSS PEPLLMLSQT PSGSGSGSGG VASGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137991	1e-134	AC137991.3 Oryza sativa chromosome 3 BAC OSJNBa0034D21 genomic sequence, complete sequence.
GenBank	AP014959	1e-134	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	1e-134	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006659656.1	2e-63	PREDICTED: heat stress transcription factor B-2b-like
Swissprot	Q6Z9C8	1e-50	HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBL	A0A0E0D4A4	1e-150	A0A0E0D4A4_9ORYZ; Uncharacterized protein
STRING	OB08G29340.1	6e-63	(Oryza brachyantha)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	4e-33	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang J, et al. Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687]