PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G24810.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 149aa MW: 15584 Da PI: 7.6222 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 68 | 1.4e-21 | 55 | 112 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE.EEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv.veitYegeHnh 58 +Dgy+W+KYGqK +k+ + rsY+rC ++C +kkkve +dp + + ++Y g H+h OMERI03G24810.2 55 EDGYEWKKYGQKFIKNIQKNRSYFRCRDQRCGAKKKVEWHPHDPGLnLRVVYDGAHHH 112 7******************************************986479********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 18.2 | 49 | 115 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.45E-21 | 50 | 115 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.9E-24 | 51 | 115 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-21 | 54 | 114 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.5E-20 | 55 | 112 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MASNSQTTTT GAGGGRGQGD DEEQTPTPPP APPPETAPST IGGGGGDGVQ LVMPEDGYEW 60 KKYGQKFIKN IQKNRSYFRC RDQRCGAKKK VEWHPHDPGL NLRVVYDGAH HHGSPSSAAG 120 EGGASAAAAA NQYDLSTQYF GGAGGPRSQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC133859 | 1e-115 | AC133859.4 Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 1e-115 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-115 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629814.1 | 4e-77 | probable WRKY transcription factor 2 isoform X1 | ||||
TrEMBL | A0A0E0D462 | 1e-105 | A0A0E0D462_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G24140.1 | 1e-106 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 3e-12 | WRKY DNA-binding protein 57 |