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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G24280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CPP | ||||||||
Protein Properties | Length: 625aa MW: 69057.3 Da PI: 6.9451 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 29.3 | 1.7e-09 | 381 | 407 | 15 | 41 |
TCR 15 kkYCeCfaagkkCseeCkCedCkNkee 41 k YCeCfa++++Cse+C+C +C+N+++ OMERI03G24280.1 381 KSYCECFASKVYCSESCSCRGCFNDHS 407 99**********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 12.278 | 373 | 457 | IPR005172 | CRC domain |
SMART | SM01114 | 1.1E-4 | 374 | 408 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 5.2E-6 | 381 | 405 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 625 aa Download sequence Send to blast |
MTQIGSSSCI KQSGPMTIAS KNCSIDRSLS QAYHDSPDNA SILPNNLPRR IQLSSDTLGS 60 DKRHDIAGKT DRETAQKHAK LSCFDQRCLD KMKQLTSGMN VQKRDLAKTH NDEITACDWD 120 YMGTQYDSSV VPESDLRFET AELLLETPKK GDAMPGKSLL PIVEANLENS RRKLFQGSAD 180 CYFQSSVDNI HAYCTSQGKE VATNHVSGIL PCPRESQLIP DHHFSDSLEV PSDYMAMNPS 240 AVSQHLRGLH RRSLFNDKAR DPTMGVQSVS NLGASTCATR HRSMPDDNYS KLVGSPVCAL 300 PNVDLHLVRM TEEMVPYNMT CTVNSTLSIS EHNTEISTVV PGNQLAPNTS EMNTHNQGDY 360 SSQATMPTSA GNSGQENPKR KSYCECFASK VYCSESCSCR GCFNDHSHEE TILSTRNRIE 420 SRNPLAFAPK VIRTCGPGLE FGEDSNATPA SSRHKRGIEW FETKEIERAD RKMKDHPKEE 480 QSEMDKYHAL CEIWGVRSTE NLFTTPSMDS RRAFALFPSE CPKSSLTSST RTSSHLHSPT 540 RTDVLLSPFG SYTQMLLGNE ASDMLLQQGD SSCTASLRIA SPNKKRVSPL RTGNTLSPTC 600 RKELALKSII PPFPSLTGDA NSELQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120505 | 0.0 | AC120505.7 Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879709.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A0E0D3Z6 | 0.0 | A0A0E0D3Z6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G23640.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14774 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 4e-26 | Tesmin/TSO1-like CXC domain-containing protein |