PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G22410.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 379aa    MW: 37079.3 Da    PI: 8.5769
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G22410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.33.8e-3941101262
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      +e+ l+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvPvGgg+rknk+s+
  OMERI03G22410.1  41 QEQGLRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRSR 101
                      57889*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027018.1E-334399IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6094599IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-264598IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104783IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAPAAGGDDA VVPRKGGGGG GGGTTPPPPP AQQPLPPPPP QEQGLRCPRC DSPNTKFCYY  60
NNYSLSQPRH FCKTCRRYWT KGGALRNVPV GGGCRKNKRS RSAAAASASR LSLNLPTVEG  120
IGGAAAVGAD PAAAAAAARL GFLGGGTTMM MSSSTSPLGG AAAAVADFQQ GGAVGMLPLP  180
RLQSPAGGGV GHHQYVPFGE WPSGDIAGGN AVSVNGGGHG AVSSTIASSI ESLSFINQDL  240
HWKLQQQRLA TMFLGPPGSA SASSAAAAQA NDGGGNGAQA PASGHAAGGG GAAFLHMAGS  300
VPSMEAAMPS ATSWFMDSCS YGLPSPPPPA AAAVAATTSS NLNSGGRSSG GGGGDDNATS  360
NCGSAIPAWG DISTFAMLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1344352GGRSSGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630014.11e-151dof zinc finger protein DOF5.7
TrEMBLA0A0E0D3A90.0A0A0E0D3A9_9ORYZ; Uncharacterized protein
STRINGOMERI03G21920.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.11e-31TARGET OF MONOPTEROS 6