PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G22160.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 249aa    MW: 27626 Da    PI: 9.9185
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G22160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.31.5e-161050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     ri n+ +r  tf kR++g++KKA+EL +LC ++ +++++++
  OMERI03G22160.1 10 RIINDAKRRATFKKRLKGLMKKASELATLCSVDTCLMVYGE 50
                     899************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.5E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.619150IPR002100Transcription factor, MADS-box
CDDcd002666.19E-27286No hitNo description
SuperFamilySSF554559.03E-24396IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-9323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-161050IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MARNKVKLQR IINDAKRRAT FKKRLKGLMK KASELATLCS VDTCLMVYGE GEAQATVVWP  60
SESEVMRVLE RFKALPQLDK YKKMTDLEGF IQERIDKLQE QLDKVRRDAD ESETKLLLIE  120
ALEGRRPGLE GITIEQLTSL GWMVDARLNI VNDQLQKLHK QGLLPASVSL PTMGVLPYTT  180
AGYTVVQEAP IQRGGWLMGV VRGIGSLGYS LFRGSDRSNT AGPSGDMVQP FNIGTGFSLA  240
NQGISFPPK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1333330.0AC133333.5 Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629573.11e-176agamous-like MADS-box protein AGL80
TrEMBLA0A0E0D3850.0A0A0E0D385_9ORYZ; Uncharacterized protein
STRINGOGLUM03G25150.11e-178(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-31AGAMOUS-like 80