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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OMERI03G20350.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
C2H2 |
| Protein Properties |
Length: 460aa MW: 49186 Da PI: 9.6882 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OMERI03G20350.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.1 | 0.0006 | 73 | 95 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ Cgk F + L H ++H
OMERI03G20350.1 73 FRCTVCGKAFASYQALGGHKSSH 95
89**********99999999888 PP
|
| 2 | zf-C2H2 | 13.9 | 0.00016 | 308 | 330 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ Cgk F+++ L H +H
OMERI03G20350.1 308 FRCSVCGKAFPSHQALGGHKASH 330
89*************99998887 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Pfam | PF13912 | 1.6E-12 | 72 | 97 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 5.89E-8 | 73 | 95 | No hit | No description |
| PROSITE profile | PS50157 | 10.824 | 73 | 100 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.022 | 73 | 95 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 75 | 95 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 5.89E-8 | 130 | 157 | No hit | No description |
| Pfam | PF13912 | 1.7E-10 | 135 | 158 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.44 | 135 | 157 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.39 | 135 | 162 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 137 | 157 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 9.4E-12 | 307 | 332 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 6.7E-8 | 308 | 330 | No hit | No description |
| SMART | SM00355 | 0.0068 | 308 | 330 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.658 | 308 | 335 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 310 | 330 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 6.7E-8 | 364 | 391 | No hit | No description |
| Pfam | PF13912 | 9.5E-11 | 368 | 392 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 9.328 | 369 | 391 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.6 | 369 | 391 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 371 | 391 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 460 aa
Download sequence Send
to blast |
MAAALQALLD PTALSLGLPT PAINKEEYLA ICLAALAGTR AGKALVGVGG QQQVQACNKW 60
LCPAPAAPEE LRFRCTVCGK AFASYQALGG HKSSHRKPPS PGDHYGAAAA AQQLSSAGDS 120
KEDSALSAAG STGPHRCTIC RRSFATGQAL GGHKRCHYWD GTSVSVSVSA SASAVRNFDL 180
NLMPLPESTA AAGIKRWAEE EEVQSPLPVK KLRILYVAFV NGQIKHKRFT LEKTIQRPRR 240
NLMCNMQYDN RKLSVHAHHT KMVTNMTHDD YVSLCLMALA QAGVGGQWPA QKQQIDMAPP 300
APERELRFRC SVCGKAFPSH QALGGHKASH RKPPTAALPM HVIDAPPPPS AEETASSTTT 360
TTTSGGGRHR CSVCHRTFAT GQALGGHKRC HYWDGLSVVS VTASASGSGS SSVRNFDLNL 420
KPVPETVAAG VRRWGEEEEV QSPLPFKKRR LSSPSLELNL
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC106887 | 0.0 | AC106887.3 Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence. |
| GenBank | AC147803 | 0.0 | AC147803.2 Oryza sativa chromosome 3 BAC OSJNBb0034P05 genomic sequence, complete sequence. |
| GenBank | AK108997 | 0.0 | AK108997.1 Oryza sativa Japonica Group cDNA clone:002-153-G07, full insert sequence. |
| GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
| GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Yilmaz A, et al.
GRASSIUS: a platform for comparative regulatory genomics across the grasses.
Plant Physiol., 2009. 149(1): p. 171-80
[PMID:18987217] - Zhang H, et al.
A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
J. Exp. Bot., 2014. 65(20): p. 5795-809
[PMID:25071223] - Li W, et al.
A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.
Cell, 2017. 170(1): p. 114-126.e15
[PMID:28666113]
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