PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G18290.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 359aa    MW: 39341.1 Da    PI: 5.2655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G18290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.000223083471054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +rRR+ri +  + Lr+++P      +k  +  ++L +A+ Y+k+L
  OMERI03G18290.1 308 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 347
                      9******************97...333..3458999999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.597298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00117308352No hitNo description
SuperFamilySSF474592.22E-6308355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-6308354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVWQPVAQTR FRVFKHENGI AVRVIACFQP SQDCQKILFA GCFLMGEKVN PWCHWSNPPW  60
TESSANNLHP PDVSLDNTNS VALPTYLNSD GYIYSGVAAS MPSIAASVTD RPVSFSSRFV  120
TTLAPSVGLS TADTLRKRPL VFFHNENNTF NVGPLLSKVV LDTVPELQGS NETNVTDVGA  180
QNTECMHENT EEIDALLCSD SDEGCLKVQE LNNRVRKYPM QNDTMSVESV ASAGASQPAK  240
KRRLSSGTDR SVVDTASSAR PDHSVDQKHL SHDDDAQSCC IGEVESDHQF ALREGEEAEG  300
DDGPDDRKRR RERIQETVAA LRKIVPGGIA KDATAVLDEA ICYLKYLKLK VKTLGAVSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306310RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0993230.0AC099323.6 Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631787.10.0transcription factor PIF4
TrEMBLA0A0E0D1L10.0A0A0E0D1L1_9ORYZ; Uncharacterized protein
STRINGOMERI03G18340.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100311820