PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G16640.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 309aa    MW: 34286.3 Da    PI: 6.5126
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G16640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35381302103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sw e++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+ll+
  OMERI03G16640.1  38 FLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLLS 122
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+ks+
  OMERI03G16640.1 123 EIHRRKSS 130
                      *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.5E-5834127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.52E-3335127IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.2E-3735127IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.8E-203861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-3138127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-2089101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAFLVERCGG EMVVSMERSH GRSTTTAAAA VTAAPAPFLS KTYQLVDDPS TDDVVSWGED  60
EATFVVWRPP EFARDLLPNY FKHNNFSSFV RQLNTYGFRK IVADRWEFAN EFFRKGAKHL  120
LSEIHRRKSS SCSQPQPPPP PPFPMHQHYP LSLFSPPTTT RSPPVGAAAY HFQEEYCSSP  180
AAPDYVSGGG GGDLLAALSE DNRQLRRRNS LLLSELAHMR KLYNDIIYFL QNHVEPAPPP  240
PAMAATSCRL VELGPSTTER RRSAPASPSG DDDAAVRLFG VRLDDDHGKK RRVQALVQED  300
EGDEQGSEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-212712719129Heat shock factor protein 1
5d5v_B2e-212712719129Heat shock factor protein 1
5d5v_D2e-212712719129Heat shock factor protein 1
5d8k_B2e-21381315109Heat shock factor protein 2
5d8l_B2e-21381315109Heat shock factor protein 2
5d8l_D2e-21381315109Heat shock factor protein 2
5d8l_F2e-21381315109Heat shock factor protein 2
5d8l_H2e-21381315109Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1257840.0AC125784.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0012F18, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627976.11e-167heat stress transcription factor B-4d
RefseqXP_025880033.11e-167heat stress transcription factor B-4d
RefseqXP_025880034.11e-167heat stress transcription factor B-4d
RefseqXP_025880035.11e-167heat stress transcription factor B-4d
RefseqXP_025880036.11e-167heat stress transcription factor B-4d
SwissprotQ10KX81e-168HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBLA0A0E0D1120.0A0A0E0D112_9ORYZ; Uncharacterized protein
STRINGOMERI03G16800.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-68heat shock transcription factor B4