PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G13020.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 445aa    MW: 47324.8 Da    PI: 5.7164
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G13020.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.93.5e-13373396226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ktelC+ + r G C+yG+rC+FaHg
  OMERI03G13020.2 373 KTELCNKWER-GACPYGARCRFAHG 396
                      8*********.*************9 PP
2zf-CCCH18.53.6e-06409435127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt +C+ fa+   C+yG rC+F H+p
  OMERI03G13020.2 409 YKTLPCQMFAAASGCPYGHRCHFRHSP 435
                      9***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.8E-16367403IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-8371402IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.079371398IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-8371397IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-10373396IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-10404435IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-7405434IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4408435IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.746408436IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEGELSLVSP ARSSCFSFED GGSGSPTWVS TVEALLRSPT SSVSDGGGGG GGGGYNSPAR  60
ASSPLQKQLP DCRDAGDLSS LTWASTLEKP LESPSSCISD GRGGGFGSPT SAFPPEKLLI  120
SPPTCVSDNR GVGNVGGFPS LPWASSLEKL LTSPSSCVSD SRGVGNSGGF PSLPWASSLE  180
KPLTSPSSCV SDGRSGGYSS PLGASAEREH EVREAEMLLR AIAERYDDCF LRLRDAAAEL  240
SDLRRERLRL AAENLHLSLL LEELESEQRK QASAMAPPKP EEDEAAQGGA PKSISIRSPG  300
YLSQKQPQGQ ARPQRLRVCA SRAMEISHPN CLIFVMGNQC SPQEAAAAGD EEDEEDKGGG  360
EVEVEAYRQG AAKTELCNKW ERGACPYGAR CRFAHGLQEL RPVIRHPRYK TLPCQMFAAA  420
SGCPYGHRCH FRHSPLRAAA ESFCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A1e-173734351174Tristetraproline
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186680.0AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372670.0AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880078.10.0putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN80.0C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLA0A0E0CZD20.0A0A0E0CZD2_9ORYZ; Uncharacterized protein
STRINGONIVA02G38660.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.22e-32C3H family protein