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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G11830.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 645aa MW: 69618 Da PI: 6.7181 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.5 | 0.00013 | 502 | 545 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ ++R +++ +++ L++l+ + +K + a++L +A +I++L OMERI03G11830.2 502 KATCKKRSQKLGDKITALQQLVSPY-----GKTDTASVLHEAAACIRQL 545 56669******************99.....9*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.563 | 496 | 545 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.7E-6 | 502 | 554 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.2E-9 | 506 | 556 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 645 aa Download sequence Send to blast |
MASPPPPPQP PSPSAATAGA AAAPVDALFL QNLMSRVQLR PPFLDTNSFL TQDLDEFLLN 60 EFAALSAAAG ASDDDDGGED GEGEGSDGEV VSGEARRRRT LAREEAKLEK EIVRLVLAGE 120 AEEALKPNSG QSVAVGDHHI CVGFHDDSGG EYRVWEWHGH VMIFDDEDGY SAEYIYGNHF 180 EPLAAATARA KKKEKEKREK ELSSGLRDLI VGDAGSGANG SKENGKGGAP RVVRRNVVNA 240 PAAPARFQKQ QLCTWIRHDD LDMLTDELER KRYRTLILMA DTFLANDLRK FPSAKRKSFS 300 LYVNTCKHFH LDVEASQPLL QGSTGIQLLS LFSGYMKDDV SSAVETQLAE SCRLESGVET 360 FRLLVSSVAV KCEASNSPST TVGFDRMIAA DYDLFHHMSF SPSLQNLQSP TFFTTRSSES 420 YLGESSIYGG GARPALAQFS YSQPIAATSA AHLVRWTAAG EPMTGDGGFR SSKRLKTATT 480 ATTQSPRHGV KCHAKPRNQT TKATCKKRSQ KLGDKITALQ QLVSPYGKTD TASVLHEAAA 540 CIRQLHQQIQ ILTAPYPGTS SSSASSQQVV FSVLESCSTV MSFFTAIATV LWLQDAGGGG 600 GTATELRRRG LCVAALSPAV VSLAAEGGRR RTDVEDQKSI WFSNQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137069 | 0.0 | AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence. | |||
GenBank | AK061080 | 0.0 | AK061080.1 Oryza sativa Japonica Group cDNA clone:006-206-F02, full insert sequence. | |||
GenBank | AK071043 | 0.0 | AK071043.1 Oryza sativa Japonica Group cDNA clone:J023079J04, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0CYU6 | 0.0 | A0A0E0CYU6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G11900.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3758 | 24 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 9e-17 | bHLH family protein |