PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G10770.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 582aa    MW: 61444.9 Da    PI: 4.8731
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G10770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.47.4e-911335321373
             GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdgd......pmqRlaayfteALaarlarsvs...elykalppsetseknsseelaalkl 83 
                      l +lL+++Aea+s   ++ ela+ +L rl+e++s ++       +m+Rlaa+ft AL+  l +s +   +  +a ++ ++s+++  ++l+a+++
  OMERI03G10770.1 133 LLHLLMAAAEALSGphKSRELARVILVRLKEMVSHTAGanaaasNMERLAAHFTDALQGLLDGSHPvggGGRQAASAAAASHHHAGDVLTAFQM 226
                      579**********8557777************7766544566669****************9976522233455566666667799******** PP

             GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                      ++++sP++kf+h+taNqaIleav+g++rvHi+D+di +G+QW++L+qa++sRp   ++p+lRiT+v+++  g +++++e g+rL+ fA+++g p
  OMERI03G10770.1 227 LQDMSPYMKFGHFTANQAILEAVSGDRRVHIVDYDIAEGIQWASLMQAMTSRPdgVPAPHLRITAVSRSGGGGARAVQEAGRRLSAFAASIGQP 320
                      *****************************************************666789*********7777********************** PP

             GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnse................s 252
                      f+f     ++ e++++ + r+ +gEal+ n+vl+                 ++L+ +  l +k+v+vve+e + ++                  
  OMERI03G10770.1 321 FSFGQCRLDSDEKFRPATVRMVKGEALVANCVLHQAAATTTIRRP-TgSVASFLSGMAALGAKLVTVVEEEGEAEKDddgdsagdaaaaaaagG 413
                      *****9999***********************9655554333333.247889*******************98866568999************ PP

             GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                      F++rf+e l+ ysa+ dslea++p++s+ r  vEr++l+++i  +v+ + +    + e    W e+++ +GF++vpls ++ +qa+lll  ++ 
  OMERI03G10770.1 414 FVRRFMEELHRYSAVWDSLEAGFPTQSRVRGLVERVILAPNIAGAVSRAYRG--VDGEGRCGWGEWMRGSGFTAVPLSCFNHSQARLLLGLFN- 504
                      ***********************************************99887..88899999*******************************. PP

             GRAS 347 dgyrveee.sgslvlgWkdrpLvsvSaW 373
                      dgy+vee   + +vlgWk r+L+s+S+W
  OMERI03G10770.1 505 DGYTVEETgPNKIVLGWKARRLMSASVW 532
                      ******99457788************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.196107513IPR005202Transcription factor GRAS
PfamPF035142.6E-88133532IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MEVTMEDVAG DFEFSGCGST TTTSSASSLD DGTGMCYAWG ELSPVADWAN FCCSDDDGGH  60
DLHGLIESML CDDTLVGVDD DGQAGLHHAD MFRDELYCYG NGSNPSSTTT TNPGSLVFDD  120
PATRDCPEKG LRLLHLLMAA AEALSGPHKS RELARVILVR LKEMVSHTAG ANAAASNMER  180
LAAHFTDALQ GLLDGSHPVG GGGRQAASAA AASHHHAGDV LTAFQMLQDM SPYMKFGHFT  240
ANQAILEAVS GDRRVHIVDY DIAEGIQWAS LMQAMTSRPD GVPAPHLRIT AVSRSGGGGA  300
RAVQEAGRRL SAFAASIGQP FSFGQCRLDS DEKFRPATVR MVKGEALVAN CVLHQAAATT  360
TIRRPTGSVA SFLSGMAALG AKLVTVVEEE GEAEKDDDGD SAGDAAAAAA AGGFVRRFME  420
ELHRYSAVWD SLEAGFPTQS RVRGLVERVI LAPNIAGAVS RAYRGVDGEG RCGWGEWMRG  480
SGFTAVPLSC FNHSQARLLL GLFNDGYTVE ETGPNKIVLG WKARRLMSAS VWAPPPLPVP  540
SSPPEGVCQP VVGMAPVATG GFARTEFDYI DSFLVEPAYA LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-4917653453379Protein SCARECROW
5b3h_D6e-4917653453379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630025.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-153NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A0E0CYD90.0A0A0E0CYD9_9ORYZ; Uncharacterized protein
STRINGOMERI03G10770.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-97GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]