PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G08070.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 303aa    MW: 33109.3 Da    PI: 8.3124
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G08070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY61.14.6e-19146146
            YABBY  1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsll 46
                     +d++s se++Cyv+C++Cnt+lav vP + l+ +vtv+CGhC +l 
  OMERI03G08070.1  1 MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLS 46
                     578999************************************9984 PP
2YABBY59.91e-18110155146
            YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsll 46 
                      +d++s se++Cyv+C++Cnt+lav vP + l+ +vtv+CGhC +l 
  OMERI03G08070.1 110 MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLS 155
                      578999************************************9984 PP
3YABBY94.13.3e-2919025498162
            YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                         +s  ++e +pr+p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa 
  OMERI03G08070.1 190 LPLVSPTSNEGSPRAPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 254
                      445577889999***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.2E-19656IPR006780YABBY protein
PfamPF046903.0E-44115255IPR006780YABBY protein
SuperFamilySSF470955.76E-8201256IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.0E-5209256IPR009071High mobility group box domain
CDDcd013904.10E-5216257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDLVSPSEHL CYVRCTYCNT VLAVGVPCKR LMDTVTVKCG HCNNLSFLSP RPPMVQPLSP  60
TDHPLGPFQL DLLQFSSHLL LLSSSSSSSS ASVLGLACFV AVAAAVAAAM DLVSPSEHLC  120
YVRCTYCNTV LAVGVPCKRL MDTVTVKCGH CNNLSFLSPR PPMVQPLSPT DHPLGPFQGP  180
CTDCRRNQPL PLVSPTSNEG SPRAPFVVKP PEKKHRLPSA YNRFMREEIQ RIKAAKPDIP  240
HREAFSMAAK NWAKCDPRCS STVSTSNSNP EPRVVAAPIP HQERANEQVV ESFDIFKQME  300
RSG
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1065530.0AB106553.1 Oryza sativa Japonica Group DROOPING LEAF mRNA for DL protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630076.11e-133protein DROOPING LEAF isoform X2
SwissprotQ76EJ01e-134YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A0E0CX840.0A0A0E0CX84_9ORYZ; Uncharacterized protein
STRINGOMERI03G08030.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-52YABBY family protein