PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G07360.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 342aa    MW: 36651.5 Da    PI: 5.6473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G07360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.6e-112663061055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  OMERI03G07360.1 266 RKRRERINERLKILQNLIPNG-----TKVDISTMLEEAVHYVKFLQ 306
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.856256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-13259318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-12261315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-12265310No hitNo description
PfamPF000104.9E-8266306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MESSEASWHS FDPSVAMEDS EAMAQLLGVQ YFGNDQEQQQ QPAAPPPPAM YWPAHDAADQ  60
YYGSAPYCYM QQQQHYGCYD GGAMVAGGDF FVPEEQLVAD PSFVVDLNLE FEDQHGGDAG  120
VAGSSATAAA AAATKMTTPA CKRKVEDHKD ESCTDNVARK KARSTAATVV QKKGNKNAQS  180
KKAQKGACSR SSNQKGSNGG GDGGNVQSSS TNYLSDDDDS LEMTSCSNVS SASKKSSLSS  240
PATGHGGAKA RAGRGAATDP QSLYARKRRE RINERLKILQ NLIPNGTKVD ISTMLEEAVH  300
YVKFLQLQIK LLSSDDMWMF APIAYNGVNV GLDLKISPPQ QQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235680.0AC123568.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1345H02, from chromosome 3, complete sequence.
GenBankAC1322140.0AC132214.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0040M05, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629469.10.0transcription factor bHLH85
TrEMBLA0A0E0CWX30.0A0A0E0CWX3_9ORYZ; Uncharacterized protein
STRINGOMERI03G07300.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116802832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-45bHLH family protein