 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OMERI03G06380.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 309aa MW: 33376.5 Da PI: 4.4473 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OMERI03G06380.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58 | 1.6e-18 | 72 | 124 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++ eq+++Le+ F +++++ ++++++A+ lgL+ rqV +WFqNrRa++k
OMERI03G06380.1 72 KRRLALEQVRALERSFDTDNKLNPDRKARIARDLGLQPRQVAIWFQNRRARWK 124
4467789*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 127.2 | 7.1e-41 | 70 | 162 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrl+ eqv++LE+sF++++kL+p+rK+++ar+Lglqprqva+WFqnrRAR+ktkqlE+d++aL++++dal+++ ++L++++++L++e++e
OMERI03G06380.1 70 EKKRRLALEQVRALERSFDTDNKLNPDRKARIARDLGLQPRQVAIWFQNRRARWKTKQLERDFAALRARHDALRADCDALRRDKDALATEIRE 162
69**************************************************************************************99986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MKRPTSSRKS KKPAGENLAF SEEGSLPAAT MEQQDEAELE VDDDDDEEVD EDMAGVHAAQ 60
SPSPSCGLGE KKRRLALEQV RALERSFDTD NKLNPDRKAR IARDLGLQPR QVAIWFQNRR 120
ARWKTKQLER DFAALRARHD ALRADCDALR RDKDALATEI RELREKLSKP ADTAASVKVE 180
AGNDAAVGAA AATVCKDGSS DDSDSSVVFN DEASPYSGAA FIGFGPQFLV DDASAATVGC 240
SSSLPALESK WHGPYSDDSC KGGVYGFTEE WLAACSGEMA GNDAAGFFSD EHASNLNFGW 300
CASGNEGWE
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 118 | 126 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CT831039 | 0.0 | CT831039.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA023E12, full insert sequence. |
