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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G06190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 27452.9 Da PI: 7.4208 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.7 | 2e-25 | 28 | 77 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s OMERI03G06190.1 28 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFAS 77 89*********************************************986 PP | |||||||
2 | K-box | 42.1 | 3.8e-15 | 110 | 190 | 18 | 98 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + a+Lk+e+ + +R++ Ge+L++L++++Lq+Le+ Le++l ++ ++K++ +l++i+ l +k +l een +L++++ OMERI03G06190.1 110 SSTCARLKEELAETSIRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQV 190 56789************************************************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-33 | 19 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.319 | 19 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-25 | 21 | 41 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-29 | 21 | 96 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 21 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.01E-37 | 21 | 92 | No hit | No description |
Pfam | PF00319 | 1.7E-24 | 28 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-25 | 41 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-25 | 56 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.964 | 106 | 196 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.9E-13 | 111 | 190 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MAGGGGGRAE GEGRAAATGK RERIAIRRID NLAARQVTFS KRRRGLFKKA EELSILCDAE 60 VGLVVFSATG KLFQFASTSM KQIIDRYNSH SKTLQRAEEP SQLDLQGEDS STCARLKEEL 120 AETSIRLRQM RGEELHRLNV EQLQELEKSL ESGLGSVLKT KSKKILDEID GLERKRMQLI 180 EENLRLKEQV SRMSTMEQPG PDSEIVYEEG QSSESVTNAS YPRPPPDNDY SSDTSLRLGL 240 SLFSSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-20 | 21 | 91 | 3 | 73 | MEF2C |
5f28_B | 7e-20 | 21 | 91 | 3 | 73 | MEF2C |
5f28_C | 7e-20 | 21 | 91 | 3 | 73 | MEF2C |
5f28_D | 7e-20 | 21 | 91 | 3 | 73 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ536158 | 0.0 | AJ536158.1 Oryza sativa Japonica Group mRNA for MADS Domain containing Protein. | |||
GenBank | AK242211 | 0.0 | AK242211.1 Oryza sativa Japonica Group cDNA, clone: J075171C16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630611.1 | 1e-159 | MADS-box transcription factor 47 isoform X2 | ||||
Swissprot | Q5K4R0 | 1e-154 | MAD47_ORYSJ; MADS-box transcription factor 47 | ||||
TrEMBL | A0A0E0CWE0 | 1e-176 | A0A0E0CWE0_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G06330.1 | 1e-159 | (Oryza glumipatula) | ||||
STRING | ORUFI03G06210.1 | 1e-159 | (Oryza rufipogon) | ||||
STRING | ONIVA02G06550.1 | 1e-159 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1221 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-68 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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