PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G04910.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 428aa MW: 46410 Da PI: 8.3401

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G04910.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.9	1.3e-39	90	150	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s OMERI03G04910.1 90 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSVS 150 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-32	86	147	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-32	92	148	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.761	94	148	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	96	132	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MWAFSSQLNK IANLTPKNSS SFFTCLQDLQ HSGSSTTEPK TQENNVQDST SPPPQPEVVD 60 TEDSSADKNS SENQQQQGDT ANQKEKLKKP DKILPCPRCS SMDTKFCYYN NYNINQPRHF 120 CKNCQRYWTA GGAMRNVPVG AGRRKSKSVS AASHFLQRVR AALPGDPPLY APVKTNGTVL 180 SFGSDLSTLD LTEQMKHLKD KFIPTTGIKN TDEMPVGLCA EGLSKTEESN QMNPKEKVSA 240 DRSPNVAQHS CMNGGAMWPF GVAPPPAYYT SSIAIPFYPA AAAAAAAYWG CMVPGAWNAP 300 WPPQSQSQSV SSSSAASPVS TMTNCFRLGK HPRDGDEELD SKSNGKVWVP KTVRIDDVDE 360 VARSSIWSLI GIKGDKVGAD HGRGCKLAKV FESKDEAKTS THTAISSLPF MQGNPAALTR 420 SVTFQEGS

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MWAFSSQLNK IANLTPKNSS SFFTCLQDLQ HSGSSTTEPK TQENNVQDST SPPPQPEVVD  60
TEDSSADKNS SENQQQQGDT ANQKEKLKKP DKILPCPRCS SMDTKFCYYN NYNINQPRHF  120
CKNCQRYWTA GGAMRNVPVG AGRRKSKSVS AASHFLQRVR AALPGDPPLY APVKTNGTVL  180
SFGSDLSTLD LTEQMKHLKD KFIPTTGIKN TDEMPVGLCA EGLSKTEESN QMNPKEKVSA  240
DRSPNVAQHS CMNGGAMWPF GVAPPPAYYT SSIAIPFYPA AAAAAAAYWG CMVPGAWNAP  300
WPPQSQSQSV SSSSAASPVS TMTNCFRLGK HPRDGDEELD SKSNGKVWVP KTVRIDDVDE  360
VARSSIWSLI GIKGDKVGAD HGRGCKLAKV FESKDEAKTS THTAISSLPF MQGNPAALTR  420
SVTFQEGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC073556	0.0	AC073556.11 Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete sequence.
GenBank	AC144491	0.0	AC144491.1 Oryza sativa Japonica Group chromosome 3 clone OSJNAa0091P11, complete sequence.
GenBank	AK066912	0.0	AK066912.1 Oryza sativa Japonica Group cDNA clone:J013089G12, full insert sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631794.1	0.0	cyclic dof factor 1
TrEMBL	A0A0E0CVT5	0.0	A0A0E0CVT5_9ORYZ; Uncharacterized protein
STRING	OMERI03G04920.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-63	cycling DOF factor 2