PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G04890.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 438aa MW: 46936.6 Da PI: 7.8021

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G04890.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	100	160	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s OMERI03G04890.1 100 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSVS 160 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-32	96	157	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.6E-32	102	158	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.761	104	158	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	106	142	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MGECKVGGGG GDCLIKLFGK TIPVPEPGAC AAGDVDKDLQ HSGSSTTEPK TQENNVQDST 60 SPPPQPEVVD TEDSSADKNS SENQQQQGDT ANQKEKLKKP DKILPCPRCS SMDTKFCYYN 120 NYNINQPRHF CKNCQRYWTA GGAMRNVPVG AGRRKSKSVS AASHFLQRVR AALPGDPPLY 180 APVKTNGTVL SFGSDLSTLD LTEQMKHLKD KFIPTTGIKN TDEMPVGLCA EGLSKTEESN 240 QMNPKEKVSA DRSPNVAQHS CMNGGAMWPF GVAPPPAYYT SSIAIPFYPA AAAAAAAYWG 300 CMVPGAWNAP WPPQSQSQSV SSSSAASPVS TMTNCFRLGK HPRDGDEELD SKSNGKVWVP 360 KTVRIDDVDE VARSSIWSLI GIKGDKVGAD HGRGCKLAKV FESKDEAKTS THTAISSLPF 420 MQGNPAALTR SVTFQEGS

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MGECKVGGGG GDCLIKLFGK TIPVPEPGAC AAGDVDKDLQ HSGSSTTEPK TQENNVQDST  60
SPPPQPEVVD TEDSSADKNS SENQQQQGDT ANQKEKLKKP DKILPCPRCS SMDTKFCYYN  120
NYNINQPRHF CKNCQRYWTA GGAMRNVPVG AGRRKSKSVS AASHFLQRVR AALPGDPPLY  180
APVKTNGTVL SFGSDLSTLD LTEQMKHLKD KFIPTTGIKN TDEMPVGLCA EGLSKTEESN  240
QMNPKEKVSA DRSPNVAQHS CMNGGAMWPF GVAPPPAYYT SSIAIPFYPA AAAAAAAYWG  300
CMVPGAWNAP WPPQSQSQSV SSSSAASPVS TMTNCFRLGK HPRDGDEELD SKSNGKVWVP  360
KTVRIDDVDE VARSSIWSLI GIKGDKVGAD HGRGCKLAKV FESKDEAKTS THTAISSLPF  420
MQGNPAALTR SVTFQEGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060900	0.0	AK060900.1 Oryza sativa Japonica Group cDNA clone:001-035-D05, full insert sequence.
GenBank	AK104523	0.0	AK104523.1 Oryza sativa Japonica Group cDNA clone:006-303-F03, full insert sequence.
GenBank	AY224429	0.0	AY224429.1 Oryza sativa (japonica cultivar-group) isolate 20575 putative H-protein promoter binding factor-2a mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631794.1	0.0	cyclic dof factor 1
TrEMBL	A0A0E0CVT3	0.0	A0A0E0CVT3_9ORYZ; Uncharacterized protein
STRING	OMERI03G04900.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-63	cycling DOF factor 2