PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G04420.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 471aa    MW: 53317.4 Da    PI: 7.9156
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G04420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind91.31.2e-281302402101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............XTTSEEEEE CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............kekiweFkh 83 
                      Fl+k+++++ d++++ ++sw + g+sfvv+d++ fa  +Lp++Fkh+nf+SFvRQLn+Y   +++  +k+s +            +++ weF++
  OMERI03G04420.1 130 FLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYFLVRTNYLNKRS-HfynlrfqgfrkiDPDRWEFAN 222
                      9**********************************************************888888777664.358888877765449******* PP

                      SXXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind  84 ksFkkgkkellekikrkk 101
                      + F +g+++ll+ ikr++
  OMERI03G04420.1 223 DGFLRGQRHLLKMIKRRR 240
                      ****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-30126239IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-47126239IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.5E-33126239IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-26130239IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-13130153IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-13168180IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-13181193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MARAVAVSCR FRHPTCGRAG EPQPHSPASP SGSFRRSGRG HEPRGLEPSI PLLASTHGCL  60
YCATLADSLA AKLAGFFSWI GADWGDELTM EKMVPGMVKE EWPPSSPEGE EEGEAPRPME  120
GLHEVGPPPF LTKTFDLVAD PATDGVVSWG RAGSSFVVWD PHVFAAVLLP RFFKHNNFSS  180
FVRQLNTYFL VRTNYLNKRS HFYNLRFQGF RKIDPDRWEF ANDGFLRGQR HLLKMIKRRR  240
PLSYLPGSQQ ALGTCLEVGQ FGLDEEIDRL KCDKNILLAE VVKLRHEQQS TKANMRAMEE  300
RLQHAEQKQV QMMGFLARAM QNPDFFHQLI HQQDKMKGLE DTFSKKRTRS IDIVPFLNPG  360
EVSQGDQLKS TLLFDPRPFA ELNDEPAKSE LENLALNIQG LGKGKQDVNR TRNQPRNQVS  420
NETELTDDFW EELLNEGARD DAGIPGMERR RPRYVDALAQ KLGYLGNSSQ K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-2112823918120Heat shock factor protein 1
5d5u_B6e-2112823927129Heat shock factor protein 1
5d5v_B6e-2112823927129Heat shock factor protein 1
5d5v_D6e-2112823927129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232238LKMIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444890.0AY344489.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649439.20.0PREDICTED: heat stress transcription factor A-2d
SwissprotQ8H7Y60.0HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A0E0CVJ70.0A0A0E0CVJ7_9ORYZ; Uncharacterized protein
STRINGOMERI03G04380.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.19e-95heat shock transcription factor A6B