PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G04040.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 417aa    MW: 45486 Da    PI: 9.7653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G04040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.8e-13203248555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + ++Er RR+r+N++++ Lr ++Pk      +K++Ka+i++ A+ +I +Lq
  OMERI03G04040.1 203 NIAMERDRRKRLNEKLFALRAVVPKI-----TKMDKASIVRDAIAHIEKLQ 248
                      6689*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.193198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-15202266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-14202252No hitNo description
PfamPF000101.2E-10203248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-14205266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAAPSSLRGR NGDCGQRRLP SLPPFQFLPE EGGDRPVGRR RRRRVGPRRR LPSPLPPRSS  60
RRREGRGRWG RRRRLRRGEA ATMTPGAAPL PSQIRYTTIP YLINFPPTPM EAAADMGVLL  120
DLYWHTPHIF DLAVADSLLM DGFGGGMYGP VAASPAMVEN EYDESLPELY AYTSQSRYAD  180
SSSPDVVNSC STAVASAAAS SKNIAMERDR RKRLNEKLFA LRAVVPKITK MDKASIVRDA  240
IAHIEKLQEE ERQLLDEISV LQSAAAVAAT AVEDVDDSGV TMPSMKKLRS TPPLDGGGGA  300
LRVASSPPLQ ILEVETKETE DFYGLILQTS QSWPSDPQLQ VSKVGEKTVA VSIRCAKTRG  360
AMAKVCHAVE SLHLKVVSAS VAAVDGTIVH TMFVETEQMS GAQEMKQRIQ SSLLSAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13443RPVGRRRRRR
23444RPVGRRRRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7316211e-157AL731621.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013O03, complete sequence.
GenBankAP0149601e-157AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633867.11e-170transcription factor bHLH35
TrEMBLA0A0E0CVD70.0A0A0E0CVD7_9ORYZ; Uncharacterized protein
STRINGOMERI03G04010.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.22e-35bHLH family protein