PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G04020.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 313aa    MW: 33191.5 Da    PI: 4.7243
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G04020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.6e-1394138655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI+ Lq
  OMERI03G04020.1  94 ILMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIQRLQ 138
                      579*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.7788137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1791153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.80E-1392142No hitNo description
PfamPF000101.7E-1093138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-1794154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-1694143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550219.61E-5234293No hitNo description
CDDcd048730.00232235301No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDAEMAMGES FAYYWETQRY LESEELDSMY LPTQDDSNYE SSSPDGSRSS SAPAAAAVGG  60
DAAAAVAGGG GTMMMMMGGG GGGGDDAGGA NKNILMERDR RRKLNEKLYA LRSVVPNITK  120
MDKASIIKDA IEYIQRLQAE EQQMLREVAA LESAAAASAA PAAANAFAGL GADEEYEYGH  180
HHPSSAAAAA AERTKKVRRA LSVSSINDAL LAAAAPAPPV EIQELRVSEV GDRVLVVSVT  240
CSKRRDAMAR VCRALEELRL RVITANITSV AGCLMHTLFV EVDHMDSVQM KQMVEAALSQ  300
LVATGSPLSS MSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422100.0AK242210.1 Oryza sativa Japonica Group cDNA, clone: J075170K16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634154.11e-153transcription factor bHLH35
TrEMBLA0A0E0CVD50.0A0A0E0CVD5_9ORYZ; Uncharacterized protein
STRINGORUFI04G07860.11e-153(Oryza rufipogon)
STRINGOS04T0301500-011e-153(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-42bHLH family protein