PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G03770.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1473aa    MW: 161318 Da    PI: 5.9324
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G03770.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-0513631388123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                       ++C    C+++F +k +L+ H+r+ +
  OMERI03G03770.2 1363 FQCDieFCDMTFETKAELRAHQRNiC 1388
                       899999*****************877 PP
2zf-C2H212.60.0004313881410323
                       ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                       C+   Cgk+Fs++ +LkrH+ +H
  OMERI03G03770.2 1388 CTdeSCGKRFSSHKYLKRHQCVH 1410
                       77778***************998 PP
3zf-C2H213.70.0001914461472123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       ykC+  dCg+sF+  s++ rH ++  H
  OMERI03G03770.2 1446 YKCSapDCGQSFRYVSDYSRHRKKfnH 1472
                       99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005459.1E-132970IPR003349JmjN domain
PROSITE profilePS5118313.6053071IPR003349JmjN domain
PfamPF023754.3E-133164IPR003349JmjN domain
SuperFamilySSF511971.24E-24213380No hitNo description
SMARTSM005587.2E-41229384IPR003347JmjC domain
PROSITE profilePS5118435.092232384IPR003347JmjC domain
PfamPF023731.4E-28262367IPR003347JmjC domain
Gene3DG3DSA:3.30.160.602.1E-413571385IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551213631385IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.53813631385IPR007087Zinc finger, C2H2
SMARTSM003552.313861410IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.00613861415IPR007087Zinc finger, C2H2
SuperFamilySSF576671.5E-613881422No hitNo description
PROSITE patternPS00028013881410IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-713921416IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.01E-1014101466No hitNo description
SMARTSM003556.6E-414161440IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.96714161445IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-1114171440IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014181440IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-1014411468IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1414461472IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.36514461473IPR007087Zinc finger, C2H2
PROSITE patternPS00028014481472IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1473 aa     Download sequence    Send to blast
MPPQPPPAAS ASASAPDPAV PAWLRGLPRA PEYRPTESEF ADPIAFLSRV EREAAAYGIC  60
KVIPPHPRPS RRFVFAHLNR SLVSSCDAPA PAPAAASDSS IPPSSSSPPP ASAAVFTTRH  120
QELGNPRRGR PTPQVLKQVW QSGERYTLDQ FESKSRAFSK THLAGLHEPT ALAVESLFWK  180
ASADRPIYIE YANDVPGSGF AAPVQLQRKK KRKRETAPMD EWEKSSGWRL SNSPWNLQAI  240
ARAPGSLTRF MPDDVPGVTS PMVYIGMLFS WFAWHVEDHD LHSLNFLHTG APKTWYAVPG  300
DRAVELEEVI RVHGYGGNTD RIASLAVLGE KTTLILVQYP GEFVVTFPRA YHVGFSHGFN  360
CGEAANFATP QWLKFAKEAA VRRAVMNYLP MLSHQQLLYL LAVSFISRNP RELLSGIRTS  420
RLRDRKKEDR ELLVKQEFLQ DMISENELIC SFLGKKSVDN VVLWEPDLLP SLTALHPCSS  480
CSKAPERKGE DGPSIGSTQS SSKDNSSSDG TACMTGTQSK GLSMDSKQAP EGEKLDTDDG  540
DDLPFDLSID SGSLTCVACG ILGYPFMAIL QPSRKALEEI SLVDKERYKL SCEKEICSNV  600
LPCSPNDGSS GCPLIANRSS SPVENANFSH QDVKPNRSDI SLMGKEFNGT LGKHIGTSCS  660
CSSENTIHPY GDTETPEKKI PSDCPGSELS KQSGRGDVNV PAVEGSDKTI SWNTGCAFAR  720
PRIFCLQHAL EIEEFLASKG GVHALIICHA DYVKLKALAI SIAEEIEFQF DYKDVALANA  780
SKSDLHLINI SIDDEGYEEE GTDWTSRMGL NLKHSSKIRK ETSESQEQPP LSFWGLFSKP  840
SPISVVSNLK WLCRKARTPY KVVGYASSPD VVATPDKVKP AVTKTQIDTS GNAHENIESE  900
QTLQQDCVLQ ESNDVADMCK RPKENDQDGH SLINIPIAVA EYPMMHQVCE RPVSVSACDD  960
PICSFDSQDS PTTAAVPAGK PTREQCGIES TELSTVQQFL DNGLIAEGGS MNFVSNHEYL  1020
ESDNATSVCK DEQLQVQQDQ LAMVLCNNPN TELVAGELHG GAASSTLENE DSCGNTSYCS  1080
DTVLKNSKPD TDDQPETCDH SVVLVTPKSS CDQMISSSDR SCSLTLDCPV STDAAFSSEK  1140
LSIAHDLMGS ELQAVHNSKA EAAASLTDVK GAKLNSIHTA QLPHESPSSD FIISEGAQSA  1200
SATAIPRQNG TSMHTESNSI DILLGVLADE SKVSSGKDEV GKASLTLMTL AGNDQSADDG  1260
TQDEVAEITD PSHGFCASDI VSRSIGSSNR TNIICYARRK HKRKSGSEFN INSPQSLGSF  1320
VRSPCESLRP RTRPAIVEDM ANETKTAETS TANKRKKAKV EAFQCDIEFC DMTFETKAEL  1380
RAHQRNICTD ESCGKRFSSH KYLKRHQCVH RDERPFKCPW DGCPMTFKWL WAQTEHIRVH  1440
TGERPYKCSA PDCGQSFRYV SDYSRHRKKF NHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-67233988346Transcription factor jumonji (Jmj) family protein
6ip4_A2e-67233988346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206213QRKKKRKR
2207213RKKKRKR
3207214RKKKRKRE
412971303RRKHKRK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630480.10.0lysine-specific demethylase SE14-like isoform X1
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A0E0CVA00.0A0A0E0CVA0_9ORYZ; Uncharacterized protein
STRINGOMERI03G03700.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-177C2H2 family protein