PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G02800.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 406aa MW: 43399.9 Da PI: 4.6761

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G02800.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	7.2e-12	185	227	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L OMERI03G02800.2 185 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 227 79*******************66......**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.129	178	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-16	183	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-13	184	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.73E-5	185	232	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.9E-16	185	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-9	185	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MELDEESFLD ELMSLRREGS APWQAPPYPG GGGGMMMSDL LFYGGDGGGA EARGGMDASP 60 FQELASMAAP PPQHPHEEFN FDCLSEVCNP YRSCGAQLVP SEAASQTQTQ LTPLRDAMVA 120 DEETSGDKAL LHGGGGGGGG GSSSPTFMFG GGTGESSEMM AGIRGAGGGV HPRSKLHGTP 180 SKNLMAERRR RKRLNDRLSM LRSIVPKISK MDRTSILGDT IDYVKELTER IKTLEEEIGA 240 TPEELDLLNT MKDSSSGNNN EMLVRNSTKF DVEKRGSGNT RIEICCPANP GVLLSTVSAL 300 EVLGLEIEQC VVSCFSDFGM QASCLQEDGK RQVVSTDEIK QTLFRSAGYG GSSGSTSFLN 360 TPESKLKICS SIVSFAFVNR YGSRPCDLSN IEFELNAKVP IVCTLA

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MELDEESFLD ELMSLRREGS APWQAPPYPG GGGGMMMSDL LFYGGDGGGA EARGGMDASP  60
FQELASMAAP PPQHPHEEFN FDCLSEVCNP YRSCGAQLVP SEAASQTQTQ LTPLRDAMVA  120
DEETSGDKAL LHGGGGGGGG GSSSPTFMFG GGTGESSEMM AGIRGAGGGV HPRSKLHGTP  180
SKNLMAERRR RKRLNDRLSM LRSIVPKISK MDRTSILGDT IDYVKELTER IKTLEEEIGA  240
TPEELDLLNT MKDSSSGNNN EMLVRNSTKF DVEKRGSGNT RIEICCPANP GVLLSTVSAL  300
EVLGLEIEQC VVSCFSDFGM QASCLQEDGK RQVVSTDEIK QTLFRSAGYG GSSGSTSFLN  360
TPESKLKICS SIVSFAFVNR YGSRPCDLSN IEFELNAKVP IVCTLA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	193	ERRRRKRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060029	0.0	AK060029.1 Oryza sativa Japonica Group cDNA clone:006-303-F08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629094.1	0.0	transcription factor bHLH93
TrEMBL	A0A0E0CUV1	0.0	A0A0E0CUV1_9ORYZ; Uncharacterized protein
STRING	OMERI03G02730.1	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	7e-59	beta HLH protein 93