PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G01350.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 372aa    MW: 39479.6 Da    PI: 6.5757
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G01350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.8e-1488139155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  OMERI03G01350.1  88 QRMTHIAVERNRRRQMNEYLAVLRSLMPEP---YVQRGDQASIVGGAIEFVKELE 139
                      79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.17E-1486143No hitNo description
SuperFamilySSF474592.09E-1786156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.30187138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-1488152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1188139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1193144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MSTLVDALCA PCSDTTLIYD TFNASAAASF LFDNAAAFCD ADILGGTATG KKEATSSAAA  60
AAADAAPPRK KRRRRAKSCK SREETETQRM THIAVERNRR RQMNEYLAVL RSLMPEPYVQ  120
RGDQASIVGG AIEFVKELEQ QLQSLEAQKR TLLPHHKARC DDAMPMHNAS GSNAGAGGCM  180
EPTTTTSNCS SSVTEDAPSA DAPPFAQFFA YPQYVWCHSP RDSTTTTTAA SASASSSSPA  240
TVAAAALQSE HRSGLADIEV SLVETHASVR VMSPRRPGQL LKMIAGLQAL RLTVLHLNVT  300
TLDSLVLYTL SVKVEEGCSL TTVDDIAAAV HHVLCIVDTE AAASEHLLAA GQLATTATAA  360
AVAKRELATY MY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874RKKRRRR
26974KKRRRR
38899RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0606950.0AK060695.1 Oryza sativa Japonica Group cDNA clone:001-030-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623756.10.0transcription factor bHLH96
TrEMBLA0A0E0CU840.0A0A0E0CU84_9ORYZ; Uncharacterized protein
STRINGOMERI03G01340.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-60bHLH family protein