PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G36130.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 611aa    MW: 67213.5 Da    PI: 5.0633
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G36130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.3e-067697426
                     ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                     ++C +f++ G C  GdrC F H 
  OMERI02G36130.1 76 VPCYYFQK-GMCVKGDRCAFLHL 97
                     69******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5547299IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-57398IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.98E-57596IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-47796IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MDSAVRPPVD DEEARRRRST DCIYFLASPL TCKKPLDGLV GAPTTPRTSQ QSAPQVSVPA  60
QAPVPNPASG TAKQGVPCYY FQKGMCVKGD RCAFLHLPQA TGSPAPQHTT KVFAPASVPH  120
PQLKKSWTKP NSSAQQNAPP AIFDKPKDSA HNGKTAQKQN LTNRAGHSSG IIHDKKGSYM  180
PSGVTKNYRP PPSTGDDLAE NGVEMGEFVR EPSAGSDVLT GGADDNAEQS LREDHGAYRR  240
TNGEQHIGML RQTHDSYGFE RSHRGSAEKL LSESRFSQRE PMPLTADSSD LRQRLLKQRR  300
LNNPRSGQVS DRHNVYPEDE RHDRHRRRGE EQASHDGVSS SRLRGRIRLP AETMFDRLDL  360
QPEKERDRGP RARLSPPSQT DLRGKLHDRL KAKPNEDVSG NVKSSLAKAN EDAESLNFAG  420
PKSLAELKAK KVAGSLMKSS RSLTGPVRMT SEIVTIKDSS DPVLFDGPKP LNAILKRKRE  480
ADSGNATDFG SKREEHSGGD EEGSQNDFRN IEDDIVGTNT EGNGGEEAFQ PEDDVVYGDS  540
LSPADDIAAE AADDASRELE EQQDVETAEE YDYEMDDVNA AEENDYQEYE DEDDDLEDDD  600
DFARKVGVMI T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040820.0AP004082.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1149_C12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626088.10.0zinc finger CCCH domain-containing protein 19 isoform X1
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLA0A0E0CTI50.0A0A0E0CTI5_9ORYZ; Uncharacterized protein
STRINGOMERI02G35520.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]